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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5  RTL1  RNAse THREE-like protein 1 
 ath-r.7  RTL1  RNAse THREE-like protein 1 
 ath-e.2  RTL1  RNAse THREE-like protein 1 
 ath-u.5  AT4G00420  Double-stranded RNA-binding domain (DsRBD)-containing protein 
 bra-r.6  103872383  ribonuclease 3-like protein 1 
 bra-r.6  103853227  ribonuclease 3-like protein 1 
 bna-r.1  106396767  ribonuclease 3-like protein 1 
 bna-r.1  106391158  ribonuclease 3-like protein 1 
 bna-r.1  125604556  ribonuclease 3-like protein 1 
 ghi-r.1  107891630  ribonuclease 3-like protein 1 
 ghi-r.1  107889048  ribonuclease 3-like protein 1 
 cit-r.1  102622895  ribonuclease 3-like protein 1 
 gma-u.5  100810647  ribonuclease 3-like protein 1 
 ppo-u.5  18097134  ribonuclease 3-like protein 1 
 mtr-u.5  25487965  dicer-like protein 4 
 nta-r.1  107830084  ribonuclease 3-like protein 1 
 nta-r.1  107763795  endoribonuclease Dicer homolog 4-like 
 osa-u.5  4347062  endoribonuclease Dicer homolog 4-like 
 zma-u.5  100500963  uncharacterized LOC100500963 
 zma-u.5  100192817  Double-stranded RNA binding motif protein family 
 tae-r.2  123103883  endoribonuclease Dicer homolog 4 
 tae-r.2  123112112  uncharacterized LOC123112112 
 tae-r.2  123121641  endoribonuclease Dicer homolog 4 
 hvu-r.1  123398220  endoribonuclease Dicer homolog 4-like 
 sbi-r.1  8060250  dicer-like protein 4 
 bdi-r.1  100838232  dicer-like protein 4 

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Top 50 coexpressed genes to RTL1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RTL1 (ath-u.5 coexpression data)

CoexMap"844404"


athRTL1 | Entrez gene ID : 844404
Species ath bra bna ghi cit gma ppo mtr nta osa zma tae hvu sbi bdi vvi sot cre sly
Paralog 4 2 3 2 1 1 1 1 2 1 2 3 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001322658.1 [sequence] [blastp]
NP_001322659.1 [sequence] [blastp]
NP_001322660.1 [sequence] [blastp]
NP_178180.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_001322658.1)
nucl 5,  cyto 4,  chlo 1,  extr 1  (predict for NP_001322659.1)
nucl 4,  cyto 3,  chlo 1,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001322660.1)
nucl 6,  cyto 4  (predict for NP_178180.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001322658.1)
other 8  (predict for NP_001322659.1)
other 8  (predict for NP_001322660.1)
other 8  (predict for NP_178180.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Condition-specific* Reference

ath-u.5
for
RTL1


ath-r.7
for
RTL1


ath-e.2
for
RTL1


ath-u.5
for
AT4G00420


bra-r.6
for
103872383


bra-r.6
for
103853227


bna-r.1
for
106396767


bna-r.1
for
106391158


bna-r.1
for
125604556


ghi-r.1
for
107891630


ghi-r.1
for
107889048


cit-r.1
for
102622895


gma-u.5
for
100810647


ppo-u.5
for
18097134


mtr-u.5
for
25487965


nta-r.1
for
107830084


nta-r.1
for
107763795


osa-u.5
for
4347062


zma-u.5
for
100500963


zma-u.5
for
100192817


tae-r.2
for
123103883


tae-r.2
for
123112112


tae-r.2
for
123121641


hvu-r.1
for
123398220


sbi-r.1
for
8060250


bdi-r.1
for
100838232



Ortholog ID: 9035
Species ath ath bra bra bna bna bna ghi ghi cit gma ppo mtr nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol RTL1 AT4G00420 LOC103872383 LOC103853227 LOC106396767 LOC106391158 LOC106351369 LOC107891630 LOC107889048 LOC102622895 LOC100810647 LOC18097134 LOC25487965 LOC107830084 LOC107763795 LOC4347062 LOC100500963 LOC100192817 LOC123103883 LOC123112112 LOC123121641 LOC123398220 LOC8060250 LOC100838232
Function* RNAse THREE-like protein 1 Double-stranded RNA-binding domain (DsRBD)-containing protein ribonuclease 3-like protein 1 ribonuclease 3-like protein 1 ribonuclease 3-like protein 1 ribonuclease 3-like protein 1 ribonuclease 3-like protein 1 ribonuclease 3-like protein 1 ribonuclease 3-like protein 1 ribonuclease 3-like protein 1 ribonuclease 3-like protein 1 ribonuclease 3-like protein 1 dicer-like protein 4 ribonuclease 3-like protein 1 endoribonuclease Dicer homolog 4-like endoribonuclease Dicer homolog 4-like uncharacterized LOC100500963 Double-stranded RNA binding motif protein family endoribonuclease Dicer homolog 4 uncharacterized LOC123112112 endoribonuclease Dicer homolog 4 endoribonuclease Dicer homolog 4-like dicer-like protein 4 dicer-like protein 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03015 mRNA surveillance pathway 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844404 828061 103872383 103853227 106396767 106391158 106351369 107891630 107889048 102622895 100810647 18097134 25487965 107830084 107763795 4347062 100500963 100192817 123103883 123112112 123121641 123398220 8060250 100838232
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