ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103873176	uncharacterized LOC103873176
bra-r.6	103874728	uncharacterized LOC103874728
bra-r.6	103855031	uncharacterized LOC103855031
bna-r.1	125598041	uncharacterized LOC125598041
bna-r.1	125581714	uncharacterized LOC125581714
bna-r.1	125591520	uncharacterized LOC125591520
ath-u.5	AT3G48070	RING/U-box superfamily protein
ath-u.5	AT5G62910	RING/U-box superfamily protein
ath-u.5	AT1G74870	RING/U-box superfamily protein
ghi-r.1	107959801	uncharacterized LOC107959801
ghi-r.1	107939079	uncharacterized LOC107939079
ghi-r.1	107933662	uncharacterized LOC107933662
cit-r.1	102618325	lisH domain-containing protein C1711.05
gma-u.5	100792365	histone-lysine N-methyltransferase SETD1A
gma-u.5	100796324	lisH domain-containing protein C1711.05
vvi-u.5	100261085	uncharacterized LOC100261085
vvi-u.5	100248510	uncharacterized LOC100248510
ppo-u.5	7484770	uncharacterized LOC7484770
ppo-u.5	7474866	uncharacterized LOC7474866
mtr-u.5	25493773	uncharacterized LOC25493773
mtr-u.5	11423781	uncharacterized LOC11423781
sly-u.5	101259850	uncharacterized LOC101259850
sly-u.5	101261009	RING/Ubox like zinc-binding domain-containing protein
sot-r.1	102597334	uncharacterized LOC102597334
sot-r.1	102604702	uncharacterized LOC102604702
nta-r.1	107811393	uncharacterized LOC107811393
nta-r.1	107759860	uncharacterized LOC107759860
nta-r.1	107774625	uncharacterized LOC107774625
osa-u.5	4336079	uncharacterized LOC4336079
osa-u.5	9268562	uncharacterized LOC9268562
zma-u.5	100276679	uncharacterized LOC100276679
tae-r.2	123045689	uncharacterized LOC123045689
tae-r.2	123053563	uncharacterized LOC123053563
tae-r.2	123189457	uncharacterized LOC123189457
hvu-r.1	123426935	uncharacterized LOC123426935
sbi-r.1	8073446	uncharacterized LOC8073446
bdi-r.1	100826612	uncharacterized LOC100826612
bdi-r.1	100842055	cellulose synthase-like protein D2
cre-r.1	CHLRE_01g040500v5	uncharacterized protein

Top 50 coexpressed genes to 103873176 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103873176 (bra-r.6 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

uncharacterized LOC103873176

KEGG

GO BP

GO:0016567 [list] [network] protein ubiquitination

(533 genes)

IEA

GO CC

GO:0030014 [list] [network] CCR4-NOT complex

(57 genes)

IEA

GO MF

GO:0004842 [list] [network] ubiquitin-protein transferase activity

(531 genes)

IEA

Protein

XP_009149847.1 [sequence] [blastp]
XP_033129894.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 3	(predict for XP_009149847.1)
nucl 6, chlo 3	(predict for XP_033129894.1)

Subcellular
localization
TargetP

chlo 9	(predict for XP_009149847.1)
chlo 9	(predict for XP_033129894.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103873176	bra-r.6 for 103874728	bra-r.6 for 103855031	bna-r.1 for 125598041	bna-r.1 for 125581714	bna-r.1 for 125591520	ath-u.5 for AT3G48070	ath-u.5 for AT5G62910	ath-u.5 for AT1G74870	ghi-r.1 for 107959801	ghi-r.1 for 107939079	ghi-r.1 for 107933662	cit-r.1 for 102618325	gma-u.5 for 100792365	gma-u.5 for 100796324	vvi-u.5 for 100261085	vvi-u.5 for 100248510	ppo-u.5 for 7484770	ppo-u.5 for 7474866	mtr-u.5 for 25493773	mtr-u.5 for 11423781	sly-u.5 for 101259850	sly-u.5 for 101261009	sot-r.1 for 102597334	sot-r.1 for 102604702	nta-r.1 for 107811393	nta-r.1 for 107759860	nta-r.1 for 107774625	osa-u.5 for 4336079	osa-u.5 for 9268562	zma-u.5 for 100276679	tae-r.2 for 123045689	tae-r.2 for 123053563	tae-r.2 for 123189457	hvu-r.1 for 123426935	sbi-r.1 for 8073446	bdi-r.1 for 100826612	bdi-r.1 for 100842055	cre-r.1 for CHLRE_01g040500v5

Please wait a moment.

Ortholog

Ortholog ID: 3347

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC103873176

uncharacterized LOC103874728

uncharacterized LOC125598041

uncharacterized LOC106424888

uncharacterized LOC106347863

RING/U-box superfamily protein

uncharacterized LOC107939079

uncharacterized LOC107933662

uncharacterized LOC107890911

lisH domain-containing protein C1711.05

histone-lysine N-methyltransferase SETD1A

lisH domain-containing protein C1711.05

uncharacterized LOC100261085

uncharacterized LOC100248510

uncharacterized LOC7484770

uncharacterized LOC7474866

uncharacterized LOC25493773

uncharacterized LOC11423781

uncharacterized LOC101259850

RING/Ubox like zinc-binding domain-containing protein

uncharacterized LOC102597334

uncharacterized LOC102604702

uncharacterized LOC107811393

uncharacterized LOC107774625

uncharacterized LOC107813209

uncharacterized LOC4336079

uncharacterized LOC9268562

uncharacterized LOC100276679

uncharacterized LOC123045689

uncharacterized LOC123053563

uncharacterized LOC123189457

uncharacterized LOC123426935

uncharacterized LOC8073446

uncharacterized LOC100826612

cellulose synthase-like protein D2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2
bra04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath03010	Ribosome	2
ath03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00920	Sulfur metabolism	3
sly01320	Sulfur cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot00290	Valine, leucine and isoleucine biosynthesis	2
sot00650	Butanoate metabolism	2
sot00660	C5-Branched dibasic acid metabolism	2
sot00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00670	One carbon pool by folate	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	6
nta00510	N-Glycan biosynthesis	2
nta00330	Arginine and proline metabolism	2
nta00410	beta-Alanine metabolism	2
nta00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00670	One carbon pool by folate	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	2
hvu00010	Glycolysis / Gluconeogenesis	2
hvu00620	Pyruvate metabolism	2
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

103873176

103874728

125598041

106424888

106347863

823962

836411

843826

107939079

107933662

107890911

102618325

100792365

100796324

100261085

100248510

7484770

7474866

25493773

11423781

101259850

101261009

102597334

102604702

107811393

107774625

107813209

4336079

9268562

100276679

123045689

123053563

123189457

123426935

8073446

100826612

100842055

5715557

The preparation time of this page was 0.4 [sec].


Species	bra	bna	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	3	3	1	2	2	2	2	2	2	3	2	1	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103873176 (bra-r.6 coexpression data)

Top 50 enrichment test to 103873176 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**