ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102597334	uncharacterized LOC102597334
sot-r.1	102604702	uncharacterized LOC102604702
sly-u.5	101261009	RING/Ubox like zinc-binding domain-containing protein
sly-u.5	101259850	uncharacterized LOC101259850
nta-r.1	107820211	uncharacterized LOC107820211
nta-r.1	107759860	uncharacterized LOC107759860
nta-r.1	107774625	uncharacterized LOC107774625
ath-u.5	AT3G48070	RING/U-box superfamily protein
ath-u.5	AT5G62910	RING/U-box superfamily protein
ath-u.5	AT1G74870	RING/U-box superfamily protein
gma-u.5	100796324	lisH domain-containing protein C1711.05
gma-u.5	100792365	histone-lysine N-methyltransferase SETD1A
bra-r.6	103873176	uncharacterized LOC103873176
bra-r.6	103874728	uncharacterized LOC103874728
vvi-u.5	100261085	uncharacterized LOC100261085
vvi-u.5	100248510	uncharacterized LOC100248510
ppo-u.5	7484770	uncharacterized LOC7484770
ppo-u.5	7474866	uncharacterized LOC7474866
mtr-u.5	25493773	uncharacterized LOC25493773
mtr-u.5	11423781	uncharacterized LOC11423781
ghi-r.1	107890911	uncharacterized LOC107890911
ghi-r.1	107933662	uncharacterized LOC107933662
ghi-r.1	107939079	uncharacterized LOC107939079
bna-r.1	125598041	uncharacterized LOC125598041
bna-r.1	125581714	uncharacterized LOC125581714
bna-r.1	125591520	uncharacterized LOC125591520
cit-r.1	102618325	lisH domain-containing protein C1711.05
osa-u.5	4336079	uncharacterized LOC4336079
osa-u.5	9268562	uncharacterized LOC9268562
zma-u.5	100276679	uncharacterized LOC100276679
tae-r.2	123045689	uncharacterized LOC123045689
tae-r.2	123053563	uncharacterized LOC123053563
tae-r.2	123189457	uncharacterized LOC123189457
hvu-r.1	123426935	uncharacterized LOC123426935
sbi-r.1	8073446	uncharacterized LOC8073446
bdi-r.1	100826612	uncharacterized LOC100826612
bdi-r.1	100842055	cellulose synthase-like protein D2
cre-r.1	CHLRE_01g040500v5	uncharacterized protein

Top 50 coexpressed genes to 102597334 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102597334 (sot-r.1 coexpression data)

CoexMap"102597334"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016567 [list] [network] protein ubiquitination

(305 genes)

IEA

GO CC

GO:0030014 [list] [network] CCR4-NOT complex

(35 genes)

IEA

GO MF

GO:0004842 [list] [network] ubiquitin-protein transferase activity

(358 genes)

IEA

Protein

XP_006354813.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, chlo 1, mito 1, vacu 1

(predict for XP_006354813.1)

Subcellular
localization
TargetP

chlo 8, other 4

(predict for XP_006354813.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102597334	sot-r.1 for 102604702	sly-u.5 for 101261009	sly-u.5 for 101259850	nta-r.1 for 107820211	nta-r.1 for 107759860	nta-r.1 for 107774625	ath-u.5 for AT3G48070	ath-u.5 for AT5G62910	ath-u.5 for AT1G74870	gma-u.5 for 100796324	gma-u.5 for 100792365	bra-r.6 for 103873176	bra-r.6 for 103874728	vvi-u.5 for 100261085	vvi-u.5 for 100248510	ppo-u.5 for 7484770	ppo-u.5 for 7474866	mtr-u.5 for 25493773	mtr-u.5 for 11423781	ghi-r.1 for 107890911	ghi-r.1 for 107933662	ghi-r.1 for 107939079	bna-r.1 for 125598041	bna-r.1 for 125581714	bna-r.1 for 125591520	cit-r.1 for 102618325	osa-u.5 for 4336079	osa-u.5 for 9268562	zma-u.5 for 100276679	tae-r.2 for 123045689	tae-r.2 for 123053563	tae-r.2 for 123189457	hvu-r.1 for 123426935	sbi-r.1 for 8073446	bdi-r.1 for 100826612	bdi-r.1 for 100842055	cre-r.1 for CHLRE_01g040500v5

Ortholog

Ortholog ID: 3347

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC102597334

uncharacterized LOC102604702

RING/Ubox like zinc-binding domain-containing protein

uncharacterized LOC101259850

uncharacterized LOC107774625

uncharacterized LOC107811393

uncharacterized LOC107813209

RING/U-box superfamily protein

lisH domain-containing protein C1711.05

histone-lysine N-methyltransferase SETD1A

uncharacterized LOC103873176

uncharacterized LOC103874728

uncharacterized LOC100261085

uncharacterized LOC100248510

uncharacterized LOC7484770

uncharacterized LOC7474866

uncharacterized LOC25493773

uncharacterized LOC11423781

uncharacterized LOC107890911

uncharacterized LOC107933662

uncharacterized LOC107939079

uncharacterized LOC125598041

uncharacterized LOC106424888

uncharacterized LOC106347863

lisH domain-containing protein C1711.05

uncharacterized LOC4336079

uncharacterized LOC9268562

uncharacterized LOC100276679

uncharacterized LOC123045689

uncharacterized LOC123053563

uncharacterized LOC123189457

uncharacterized LOC123426935

uncharacterized LOC8073446

uncharacterized LOC100826612

cellulose synthase-like protein D2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot00290	Valine, leucine and isoleucine biosynthesis	2
sot00650	Butanoate metabolism	2
sot00660	C5-Branched dibasic acid metabolism	2
sot00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00920	Sulfur metabolism	3
sly01320	Sulfur cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	6
nta00510	N-Glycan biosynthesis	2
nta00330	Arginine and proline metabolism	2
nta00410	beta-Alanine metabolism	2
nta00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00670	One carbon pool by folate	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00670	One carbon pool by folate	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath03010	Ribosome	2
ath03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2
bra04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	2
hvu00010	Glycolysis / Gluconeogenesis	2
hvu00620	Pyruvate metabolism	2
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

102597334

102604702

101261009

101259850

107774625

107811393

107813209

823962

836411

843826

100796324

100792365

103873176

103874728

100261085

100248510

7484770

7474866

25493773

11423781

107890911

107933662

107939079

125598041

106424888

106347863

102618325

4336079

9268562

100276679

123045689

123053563

123189457

123426935

8073446

100826612

100842055

5715557

The preparation time of this page was 0.1 [sec].


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	2	3	3	2	2	2	2	2	3	3	1	2	1	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102597334 (sot-r.1 coexpression data)

Top 50 enrichment test to 102597334 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**