ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-r.7	100127401	KNT1
gma-u.5	100127401	KNT1
gma-m.5	100127401	KNT1
gma-u.5	100803730	homeobox protein knotted-1-like 6
gma-u.5	100805837	homeobox protein SBH1-like
mtr-u.5	11415594	homeobox protein knotted-1-like 6
mtr-u.5	11406488	homeobox protein knotted-1-like 1
ppo-u.5	7463625	homeobox protein SBH1
ppo-u.5	7484545	homeobox protein SBH1
ath-u.5	KNAT6	homeobox protein knotted-1-like 6
ath-u.5	KNAT1	homeobox knotted-like protein
ath-u.5	KNAT2	homeobox knotted-like protein
bra-r.6	103840767	homeobox protein knotted-1-like 6
bra-r.6	103858468	homeobox protein knotted-1-like 1
bra-r.6	STM	homeobox protein SHOOT MERISTEMLESS
vvi-u.5	100264808	homeobox protein knotted-1-like 1
vvi-u.5	100255834	homeobox protein knotted-1-like 2
ghi-r.1	107933765	homeobox protein knotted-1-like 1
ghi-r.1	107935395	homeobox protein SBH1
ghi-r.1	107930537	homeobox protein knotted-1-like 2
bna-r.1	106420956	homeobox protein knotted-1-like 6
bna-r.1	106385537	homeobox protein knotted-1-like 1
bna-r.1	111213523	homeobox protein knotted-1-like 6
cit-r.1	102614106	homeobox protein SHOOT MERISTEMLESS
cit-r.1	102622339	homeobox protein knotted-1-like 1
cit-r.1	102628261	homeobox protein knotted-1-like 6
sly-u.5	T6	class I knotted-like homeodomain protein
sly-u.5	KN4	knotted homeodomain protein 4
sot-r.1	102601860	homeotic protein knotted-1
sot-r.1	POTH15	homeobox protein knotted-1-like LET6-like
nta-r.1	107826559	homeobox protein knotted-1-like LET6
osa-u.5	4342320	homeobox protein knotted-1-like 12
osa-u.5	4337701	homeobox protein knotted-1-like 10
zma-u.5	100283277	homeobox protein rough sheath 1
zma-u.5	100283504	KNOX1 domain containing protein
zma-u.5	541960	liguleless 4
tae-r.2	123180294	homeobox protein knotted-1-like 10
hvu-r.1	123415825	homeobox protein knotted-1-like 10
sbi-r.1	8054187	homeobox protein knotted-1-like 4
sbi-r.1	8059967	homeobox protein knotted-1-like 7
sbi-r.1	8060322	homeobox protein knotted-1-like 1
bdi-r.1	100839205	homeobox protein knotted-1-like 10
bdi-r.1	100833629	homeobox protein knotted-1-like 4

Top 50 coexpressed genes to 100127401 (gma-r.7 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100127401 (gma-r.7 coexpression data)

CoexMap"100127401"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(844 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(449 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(557 genes)	IEA

Protein

NP_001237352.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for NP_001237352.1)

Subcellular
localization
TargetP

other 7, chlo 5

(predict for NP_001237352.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-r.7 for 100127401	gma-u.5 for 100127401	gma-m.5 for 100127401	gma-u.5 for 100803730	gma-u.5 for 100805837	mtr-u.5 for 11415594	mtr-u.5 for 11406488	ppo-u.5 for 7463625	ppo-u.5 for 7484545	ath-u.5 for KNAT6	ath-u.5 for KNAT1	ath-u.5 for KNAT2	bra-r.6 for 103840767	bra-r.6 for 103858468	bra-r.6 for STM	vvi-u.5 for 100264808	vvi-u.5 for 100255834	ghi-r.1 for 107933765	ghi-r.1 for 107935395	ghi-r.1 for 107930537	bna-r.1 for 106420956	bna-r.1 for 106385537	bna-r.1 for 111213523	cit-r.1 for 102614106	cit-r.1 for 102622339	cit-r.1 for 102628261	sly-u.5 for T6	sly-u.5 for KN4	sot-r.1 for 102601860	sot-r.1 for POTH15	nta-r.1 for 107826559	osa-u.5 for 4342320	osa-u.5 for 4337701	zma-u.5 for 100283277	zma-u.5 for 100283504	zma-u.5 for 541960	tae-r.2 for 123180294	hvu-r.1 for 123415825	sbi-r.1 for 8054187	sbi-r.1 for 8059967	sbi-r.1 for 8060322	bdi-r.1 for 100839205	bdi-r.1 for 100833629

Ortholog

Ortholog ID: 275

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

sbi

bdi

Symbol

KNAT6

KNAT2

STM

KN1

TKn3

POTH15

Function^*

homeobox protein knotted-1-like 6

homeotic protein knotted-1

homeobox protein knotted-1-like

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 1

homeotic protein knotted-1

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

homeobox knotted-like protein

KNOX/ELK homeobox transcription factor

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like LET6

homeobox protein SBH1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 6

homeobox protein SHOOT MERISTEMLESS

homeobox protein knotted-1-like LET6

homeotic protein knotted-1

class I knotted-like homeodomain protein

homeotic protein knotted-1

knotted 3 protein

homeotic protein knotted-1

homeobox protein knotted-1-like LET6-like

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 12

homeobox protein knotted-1-like 10

liguleless 4

liguleless 3

knotted related homeobox 5

homeobox protein knotted-1-like 10

homeobox protein KNOX3

homeobox protein knotted-1-like 7

homeobox protein rough sheath 1

homeobox protein knotted-1-like 10

homeobox protein rough sheath 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	5
cit00941	Flavonoid biosynthesis	2
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	2
sot00071	Fatty acid degradation	2
sot00350	Tyrosine metabolism	2
sot00620	Pyruvate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	2

Expression

Expression pattern

Entrez Gene ID^*

100786454

100800822

100803095

11415594

11406488

25482021

7478899

112327500

838946

843388

842534

103858468

103852657

103835665

100255834

100248152

107924993

107938311

107895047

106404904

125600843

102614106

102609444

102615394

543520

544007

544029

102601860

102581859

107781949

107817797

4342320

4337701

541960

542487

541961

123180294

123180293

123090945

8059967

8059916

8071273

100839205

100832589

The preparation time of this page was 0.2 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	2	2	3	3	2	3	3	3	2	2	1	2	3	1	1	3	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100127401 (gma-r.7 coexpression data)

Top 50 enrichment test to 100127401 (gma-r.7 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**