ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100803730	homeobox protein knotted-1-like 6
gma-r.7	100803730	homeobox protein knotted-1-like 6
gma-u.5	100791704	homeobox protein knotted-1-like LET6
gma-u.5	100807602	homeobox protein knotted-1-like 2-like
gma-u.5	100785764	homeobox protein knotted-1-like 6
mtr-u.5	25486232	homeobox protein SBH1
mtr-u.5	11406488	homeobox protein knotted-1-like 1
mtr-u.5	25482021	homeotic protein knotted-1
ppo-u.5	7460768	homeobox protein knotted-1-like 6
ppo-u.5	7463625	homeobox protein SBH1
ppo-u.5	7467239	homeobox protein knotted-1-like 2
ath-u.5	STM	KNOX/ELK homeobox transcription factor
ath-u.5	KNAT6	homeobox protein knotted-1-like 6
ath-u.5	KNAT1	homeobox knotted-like protein
bra-r.6	STM	homeobox protein SHOOT MERISTEMLESS
bra-r.6	103840767	homeobox protein knotted-1-like 6
bra-r.6	103852657	homeobox protein knotted-1-like 2
vvi-u.5	100267474	homeobox protein SBH1
vvi-u.5	100264808	homeobox protein knotted-1-like 1
ghi-r.1	107933765	homeobox protein knotted-1-like 1
ghi-r.1	107930537	homeobox protein knotted-1-like 2
ghi-r.1	107927170	homeobox protein knotted-1-like 1
bna-r.1	106395301	homeobox protein knotted-1-like 2
bna-r.1	106434220	homeobox protein knotted-1-like 6
bna-r.1	106444191	homeobox protein SHOOT MERISTEMLESS
cit-r.1	102614106	homeobox protein SHOOT MERISTEMLESS
cit-r.1	102609444	homeobox protein knotted-1-like LET6
cit-r.1	102615394	homeotic protein knotted-1
sly-u.5	T6	class I knotted-like homeodomain protein
sly-u.5	KN4	knotted homeodomain protein 4
sot-r.1	102577616	POTH1
sot-r.1	102579398	homeobox protein knotted-1-like 1-like
sot-r.1	POTH15	homeobox protein knotted-1-like LET6-like
nta-r.1	107826559	homeobox protein knotted-1-like LET6
nta-r.1	107808713	homeobox protein knotted-1-like 1
osa-u.5	4342320	homeobox protein knotted-1-like 12
zma-u.5	541960	liguleless 4
zma-u.5	100193050	uncharacterized LOC100193050
zma-u.5	100283504	KNOX1 domain containing protein
tae-r.2	123113454	homeobox protein rough sheath 1
hvu-r.1	123447644	homeobox protein KNOX3
sbi-r.1	8060542	homeotic protein knotted-1
sbi-r.1	8059916	homeobox protein rough sheath 1
sbi-r.1	8054187	homeobox protein knotted-1-like 4
bdi-r.1	100821336	homeobox protein knotted-1-like 12
bdi-r.1	100830103	homeobox protein knotted-1-like 1
bdi-r.1	100832589	homeobox protein rough sheath 1

Top 50 coexpressed genes to 100803730 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100803730 (gma-u.5 coexpression data)

CoexMap"100803730"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(844 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(449 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(557 genes)	IEA

Protein

XP_003531995.2 [sequence] [blastp]
XP_040874416.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cysk 1	(predict for XP_003531995.2)
cyto 6, chlo 1, plas 1, nucl 1, mito 1, golg_plas 1, cysk_plas 1, E.R._plas 1	(predict for XP_040874416.1)

Subcellular
localization
TargetP

other 9	(predict for XP_003531995.2)
other 9	(predict for XP_040874416.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100803730	gma-r.7 for 100803730	gma-u.5 for 100791704	gma-u.5 for 100807602	gma-u.5 for 100785764	mtr-u.5 for 25486232	mtr-u.5 for 11406488	mtr-u.5 for 25482021	ppo-u.5 for 7460768	ppo-u.5 for 7463625	ppo-u.5 for 7467239	ath-u.5 for STM	ath-u.5 for KNAT6	ath-u.5 for KNAT1	bra-r.6 for STM	bra-r.6 for 103840767	bra-r.6 for 103852657	vvi-u.5 for 100267474	vvi-u.5 for 100264808	ghi-r.1 for 107933765	ghi-r.1 for 107930537	ghi-r.1 for 107927170	bna-r.1 for 106395301	bna-r.1 for 106434220	bna-r.1 for 106444191	cit-r.1 for 102614106	cit-r.1 for 102609444	cit-r.1 for 102615394	sly-u.5 for T6	sly-u.5 for KN4	sot-r.1 for 102577616	sot-r.1 for 102579398	sot-r.1 for POTH15	nta-r.1 for 107826559	nta-r.1 for 107808713	osa-u.5 for 4342320	zma-u.5 for 541960	zma-u.5 for 100193050	zma-u.5 for 100283504	tae-r.2 for 123113454	hvu-r.1 for 123447644	sbi-r.1 for 8060542	sbi-r.1 for 8059916	sbi-r.1 for 8054187	bdi-r.1 for 100821336	bdi-r.1 for 100830103	bdi-r.1 for 100832589

Ortholog

Ortholog ID: 275

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

sbi

bdi

Symbol

STM

KNAT6

KNAT2

KN1

TKn3

POTH15

Function^*

homeobox protein knotted-1-like

homeobox protein knotted-1-like 6

homeotic protein knotted-1

homeobox protein knotted-1-like 1

homeotic protein knotted-1

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 1

KNOX/ELK homeobox transcription factor

homeobox protein knotted-1-like 6

homeobox knotted-like protein

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like LET6

homeobox protein knotted-1-like 2

homeobox protein SBH1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 6

homeobox protein SHOOT MERISTEMLESS

homeobox protein knotted-1-like LET6

homeotic protein knotted-1

class I knotted-like homeodomain protein

homeotic protein knotted-1

knotted 3 protein

homeobox protein knotted-1-like LET6-like

homeotic protein knotted-1

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 12

homeobox protein knotted-1-like 10

liguleless 4

knotted related homeobox 5

liguleless 3

homeobox protein KNOX3

homeobox protein knotted-1-like 10

homeobox protein rough sheath 1

homeobox protein knotted-1-like 10

homeobox protein knotted-1-like 7

homeobox protein rough sheath 1

homeobox protein knotted-1-like 10

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	5
cit00941	Flavonoid biosynthesis	2
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	2
sot00071	Fatty acid degradation	2
sot00350	Tyrosine metabolism	2
sot00620	Pyruvate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

100803095

100786454

100800822

11406488

25482021

11415594

7478899

112327500

842534

838946

843388

103852657

103858468

103835665

100248152

100255834

107924993

107938311

107895047

106404904

125600843

102614106

102609444

102615394

543520

544007

544029

102581859

102601860

107817797

107781949

4342320

4337701

541960

541961

542487

123090945

123180294

123180293

8059916

8071273

8059967

100832589

100839205

The preparation time of this page was 0.4 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	3	3	2	3	3	3	2	3	2	1	3	1	1	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100803730 (gma-u.5 coexpression data)

Top 50 enrichment test to 100803730 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**