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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100788604   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 gma-r.7   100788604   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 ppo-u.5   18098873   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 vvi-u.5   100253776   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 ghi-r.1   107895018   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 ghi-r.1   107948831   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 cit-r.1   102608214   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like 
 sly-u.5   101258500   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 sot-r.1   102578356   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like 
 nta-r.1   107767176   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 nta-r.1   107777512   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like 

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Top 50 coexpressed genes to 100788604 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100788604 (gma-u.5 coexpression data)

CoexMap"100788604"


gmaLOC100788604 | Entrez gene ID : 100788604      
Species gma ppo vvi ghi cit sly sot nta sbi cre ath bra mtr tae zma osa bdi hvu bna
Paralog 2 1 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (70 genes)
gmx00999 [list] [network] Biosynthesis of various plant secondary metabolites (93 genes)
gmx01230 [list] [network] Biosynthesis of amino acids (403 genes)
GO BP
GO:0019632 [list] [network] shikimate metabolic process  (5 genes)  IEA  
GO:0009423 [list] [network] chorismate biosynthetic process  (9 genes)  IEA  
GO CC
GO MF
GO:0003855 [list] [network] 3-dehydroquinate dehydratase activity  (5 genes)  IEA  
GO:0004764 [list] [network] shikimate 3-dehydrogenase (NADP+) activity  (5 genes)  IEA  
Protein XP_003520825.1 [sequence] [blastp]
XP_006577266.2 [sequence] [blastp]
XP_014629492.1 [sequence] [blastp]
XP_014629493.1 [sequence] [blastp]
XP_014629494.1 [sequence] [blastp]
XP_014629495.1 [sequence] [blastp]
XP_040870159.1 [sequence] [blastp]
XP_040870160.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  pero 2,  cyto 1,  extr 1,  vacu 1,  cyto_nucl 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_003520825.1)
cyto 9,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_006577266.2)
cyto 7,  chlo 2  (predict for XP_014629492.1)
cyto 7,  chlo 2  (predict for XP_014629493.1)
cyto 7,  chlo 2  (predict for XP_014629494.1)
cyto 7,  chlo 2  (predict for XP_014629495.1)
cyto 7,  chlo 2  (predict for XP_040870159.1)
cyto 5,  chlo 1,  nucl 1,  mito 1,  chlo_mito 1  (predict for XP_040870160.1)
Subcellular
localization
TargetP
scret 6,  other 3  (predict for XP_003520825.1)
mito 7,  other 3  (predict for XP_006577266.2)
mito 7,  other 3  (predict for XP_014629492.1)
mito 7,  other 3  (predict for XP_014629493.1)
mito 7,  other 3  (predict for XP_014629494.1)
mito 7,  other 3  (predict for XP_014629495.1)
mito 7,  other 3  (predict for XP_040870159.1)
mito 7,  other 3  (predict for XP_040870160.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100788604
gma-r.7
for
100788604
ppo-u.5
for
18098873
vvi-u.5
for
100253776
ghi-r.1
for
107895018
ghi-r.1
for
107948831
cit-r.1
for
102608214
sly-u.5
for
101258500
sot-r.1
for
102578356
nta-r.1
for
107767176
nta-r.1
for
107777512


Ortholog ID: 14977
Species gma ppo vvi ghi ghi cit sly sot nta nta
Symbol LOC100788604 LOC18098873 LOC100253776 LOC107895018 LOC107948831 LOC102608214 LOC101258500 LOC102578356 LOC107767176 LOC107777512
Function* bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 3
gma00562 Inositol phosphate metabolism 3
gma01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00940 Phenylpropanoid biosynthesis 7
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
ppo01230 Biosynthesis of amino acids 5
ppo00360 Phenylalanine metabolism 4
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
ghi01230 Biosynthesis of amino acids 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
ghi01230 Biosynthesis of amino acids 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cit01230 Biosynthesis of amino acids 3
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 8
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
sly01200 Carbon metabolism 4
sly00010 Glycolysis / Gluconeogenesis 2
sly00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
sot01230 Biosynthesis of amino acids 10
sot00940 Phenylpropanoid biosynthesis 5
sot00941 Flavonoid biosynthesis 3
sot00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
nta01230 Biosynthesis of amino acids 8
nta00999 Biosynthesis of various plant secondary metabolites 5
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
nta00999 Biosynthesis of various plant secondary metabolites 5
nta01230 Biosynthesis of amino acids 5
nta04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100788604 18098873 100253776 107895018 107948831 102608214 101258500 102578356 107767176 107777512
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