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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100253776   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 vvi-r.5   100253776   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 gma-u.5   100788604   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 ppo-u.5   18098873   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 sly-u.5   101258500   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 

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Top 50 coexpressed genes to 100253776 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100253776 (vvi-u.5 coexpression data)

CoexMap"100253776"


vviLOC100253776 | Entrez gene ID : 100253776      
Species vvi gma ppo sly tae mtr osa hvu zma ghi bdi cit ath bra cre sbi bna nta sot
Paralog 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (49 genes)
vvi00999 [list] [network] Biosynthesis of various plant secondary metabolites (85 genes)
vvi01230 [list] [network] Biosynthesis of amino acids (211 genes)
GO BP
GO:0019632 [list] [network] shikimate metabolic process  (4 genes)  IEA  
GO:0009423 [list] [network] chorismate biosynthetic process  (7 genes)  IEA  
GO CC
GO MF
GO:0003855 [list] [network] 3-dehydroquinate dehydratase activity  (4 genes)  IEA  
GO:0004764 [list] [network] shikimate 3-dehydrogenase (NADP+) activity  (4 genes)  IEA  
Protein XP_002270055.1 [sequence] [blastp]
XP_010660001.1 [sequence] [blastp]
XP_019080266.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 2,  cyto_pero 2,  cyto_plas 2  (predict for XP_002270055.1)
cyto 6,  nucl 1,  chlo 1,  vacu 1,  cysk 1,  golg 1,  nucl_plas 1  (predict for XP_010660001.1)
cyto 5,  pero 3,  cyto_nucl 3  (predict for XP_019080266.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002270055.1)
other 9  (predict for XP_010660001.1)
other 6  (predict for XP_019080266.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100253776

.
vvi-r.5
for
100253776

.
gma-u.5
for
100788604

.
ppo-u.5
for
18098873

.
sly-u.5
for
101258500

.


Ortholog ID: 14977
Species gma sly vvi ppo ghi ghi sot cit nta nta
Symbol LOC100788604 LOC101258500 LOC100253776 LOC18098873 LOC107948831 LOC107895018 LOC102578356 LOC102608214 LOC107767176 LOC107777512
Function* bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 3
gma00562 Inositol phosphate metabolism 3
gma01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 8
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
sly01200 Carbon metabolism 4
sly00010 Glycolysis / Gluconeogenesis 2
sly00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00940 Phenylpropanoid biosynthesis 7
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
ppo01230 Biosynthesis of amino acids 5
ppo00360 Phenylalanine metabolism 4
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
ghi01230 Biosynthesis of amino acids 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
ghi01230 Biosynthesis of amino acids 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
sot01230 Biosynthesis of amino acids 10
sot00940 Phenylpropanoid biosynthesis 5
sot00941 Flavonoid biosynthesis 3
sot00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cit01230 Biosynthesis of amino acids 3
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
nta01230 Biosynthesis of amino acids 8
nta00999 Biosynthesis of various plant secondary metabolites 5
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
nta00999 Biosynthesis of various plant secondary metabolites 5
nta01230 Biosynthesis of amino acids 5
nta04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100788604 101258500 100253776 18098873 107948831 107895018 102578356 102608214 107767176 107777512
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