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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100805941   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 gma-r.7   100805941   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 gma-m.5   100805941   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 gma-u.5   100818067   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 mtr-u.5   25492714   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 mtr-u.5   25492711   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 ppo-u.5   7456396   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 ppo-u.5   7461194   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 ath-u.5   HDR   4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
 vvi-u.5   100267479   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 sly-u.5   HDR   4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
 osa-u.5   4334003   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like 
 zma-u.5   lw1   lemon white1 

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Top 50 coexpressed genes to 100805941 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100805941 (gma-u.5 coexpression data)

CoexMap"100805941"


gmaLOC100805941 | Entrez gene ID : 100805941      
Species gma mtr ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00900 [list] [network] Terpenoid backbone biosynthesis (91 genes)
GO BP
GO:0050992 [list] [network] dimethylallyl diphosphate biosynthetic process  (2 genes)  IEA  
GO:0019288 [list] [network] isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway  (7 genes)  IEA  
GO CC
GO MF
GO:0051745 [list] [network] 4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity  (2 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3089 genes)  IEA  
Protein XP_003537898.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  chlo_mito 2  (predict for XP_003537898.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_003537898.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100805941

.
gma-r.7
for
100805941

.
gma-m.5
for
100805941

.
gma-u.5
for
100818067

.
mtr-u.5
for
25492714

.
mtr-u.5
for
25492711

.
ppo-u.5
for
7456396

.
ppo-u.5
for
7461194

.
ath-u.5
for
HDR

.
vvi-u.5
for
100267479

.
sly-u.5
for
HDR

.
osa-u.5
for
4334003

.
zma-u.5
for
lw1

.


Ortholog ID: 6062
Species ath gma gma sly osa zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol HDR LOC100805941 LOC100818067 HDR LOC4334003 lw1 LOC103834423 LOC103838937 LOC100267479 LOC7461194 LOC25492711 LOC25492714 LOC123090995 LOC123086975 LOC123447676 LOC121214829 LOC107886975 LOC106401636 LOC106434468 CHLRE_08g372950v5 LOC8059949 LOC102592556 LOC102610997 LOC100825558 LOC107760258 LOC107765472
Function* 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like lemon white1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic uncharacterized protein 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 8
gma00270 Cysteine and methionine metabolism 4
gma01200 Carbon metabolism 3
gma01230 Biosynthesis of amino acids 3
gma00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 6
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 4
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00260 Glycine, serine and threonine metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00900 Terpenoid backbone biosynthesis 2
bra00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04146 Peroxisome 3
vvi01200 Carbon metabolism 2
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 5
mtr00906 Carotenoid biosynthesis 4
mtr00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 6
mtr00906 Carotenoid biosynthesis 4
mtr00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 14
tae03420 Nucleotide excision repair 2
tae04120 Ubiquitin mediated proteolysis 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00900 Terpenoid backbone biosynthesis 3
hvu04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
ghi00906 Carotenoid biosynthesis 4
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
ghi00906 Carotenoid biosynthesis 4
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
bna00061 Fatty acid biosynthesis 2
bna00071 Fatty acid degradation 2
bna01212 Fatty acid metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
bna00061 Fatty acid biosynthesis 2
bna00071 Fatty acid degradation 2
bna01212 Fatty acid metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 4
cre00900 Terpenoid backbone biosynthesis 2
cre00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 3
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 3
sot00900 Terpenoid backbone biosynthesis 3
sot00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 9
nta00061 Fatty acid biosynthesis 2
nta00071 Fatty acid degradation 2
nta01212 Fatty acid metabolism 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 11
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829585 100805941 100818067 100316901 4334003 100383164 103834423 103838937 100267479 7461194 25492711 25492714 123090995 123086975 123447676 121214829 107886975 106401636 106434468 5726875 8059949 102592556 102610997 100825558 107760258 107765472
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