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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   ycf2   Ycf2 
 gma-r.7   ycf2   Ycf2 
 gma-u.5   ycf2   Ycf2 
 mtr-u.5   ycf2   hypothetical chloroplast RF2 
 mtr-u.5   120579888   protein Ycf2 
 mtr-u.5   25480042   protein Ycf2 
 ppo-u.5   ycf2   Ycf2 
 ppo-u.5   ycf2   Ycf2 
 ath-u.5   ycf2   Ycf2 
 ath-u.5   ycf2   Ycf2 
 bra-r.6   117129342   protein Ycf2-like 
 bra-r.6   117129787   protein Ycf2 
 bra-r.6   117126247   protein Ycf2 
 vvi-u.5   ycf2   Ycf2 
 vvi-u.5   ycf2   Ycf2 
 ghi-r.1   121209835   protein Ycf2-like 
 bna-r.1   125602703   protein Ycf2 
 cit-r.1   ycf2   Ycf2 
 cit-r.1   ycf2   Ycf2 
 sly-u.5   ycf2   hypothetical chloroplast RF2 
 sly-u.5   ycf2   hypothetical chloroplast RF2 
 sot-r.1   ycf2   Ycf2 
 sot-r.1   ycf2   Ycf2 
 nta-r.1   ycf2   Ycf2 
 nta-r.1   ycf2   Ycf2 
 nta-r.1   142169795   protein Ycf2-like 

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Top 50 coexpressed genes to ycf2 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ycf2 (gma-u.5 coexpression data)

CoexMap"3989340"


gmaycf2 | Entrez gene ID : 3989340    
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta bdi osa tae zma cre sbi hvu
Paralog 3 3 2 2 3 2 1 1 2 2 2 3 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein YP_538807.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_pero 2,  cyto_E.R. 2  (predict for YP_538807.1)
Subcellular
localization
TargetP
other 7  (predict for YP_538807.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
ycf2
gma-r.7
for
ycf2
gma-u.5
for
ycf2
mtr-u.5
for
ycf2
mtr-u.5
for
120579888
mtr-u.5
for
25480042
ppo-u.5
for
ycf2
ppo-u.5
for
ycf2
ath-u.5
for
ycf2
ath-u.5
for
ycf2
bra-r.6
for
117129342
bra-r.6
for
117129787
bra-r.6
for
117126247
vvi-u.5
for
ycf2
vvi-u.5
for
ycf2
ghi-r.1
for
121209835
bna-r.1
for
125602703
cit-r.1
for
ycf2
cit-r.1
for
ycf2
sly-u.5
for
ycf2
sly-u.5
for
ycf2
sot-r.1
for
ycf2
sot-r.1
for
ycf2
nta-r.1
for
ycf2
nta-r.1
for
ycf2
nta-r.1
for
142169795


Ortholog ID: 837
Species gma gma mtr mtr mtr ppo ppo ath ath bra bra bra vvi ghi bna bna cit cit sly sly sot sot nta nta nta
Symbol ycf2 ycf2 ycf2 LOC120579888 LOC25480042 ycf2 ycf2 ycf2 ycf2 LOC117129787 LOC117126247 LOC117129786 ycf2 LOC121212549 LOC125600259 LOC125600258 ycf2 ycf2 ycf2 ycf2 ycf2 ycf2 ycf2 ycf2 LOC142169795
Function* Ycf2 Ycf2 hypothetical chloroplast RF2 protein Ycf2 protein Ycf2 Ycf2 Ycf2 Ycf2 Ycf2 protein Ycf2 protein Ycf2 protein Ycf2 Ycf2 protein Ycf2-like protein Ycf2-like protein Ycf2-like Ycf2 Ycf2 hypothetical chloroplast RF2 hypothetical chloroplast RF2 Ycf2 Ycf2 Ycf2 Ycf2 protein Ycf2-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 6
gma03020 RNA polymerase 2
gma00195 Photosynthesis 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 6
gma03020 RNA polymerase 4
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 5
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 9
ppo03020 RNA polymerase 4
ppo03010 Ribosome 3
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 10
ppo03020 RNA polymerase 4
ppo00195 Photosynthesis 3
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath03020 RNA polymerase 3
ath00195 Photosynthesis 2
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath03020 RNA polymerase 3
ath00195 Photosynthesis 2
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 3
bra00195 Photosynthesis 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 4
bra03020 RNA polymerase 3
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 3
bra00195 Photosynthesis 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 11
vvi00195 Photosynthesis 6
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 9
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
bna03020 RNA polymerase 3
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 4
sly03020 RNA polymerase 3
sly00190 Oxidative phosphorylation 3
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 4
sly03010 Ribosome 4
sly00190 Oxidative phosphorylation 3
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 7
sot00190 Oxidative phosphorylation 3
sot03020 RNA polymerase 3
sot00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot00190 Oxidative phosphorylation 4
sot00195 Photosynthesis 3
sot03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03010 Ribosome 3
nta00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03020 RNA polymerase 4
nta00195 Photosynthesis 4
nta00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 11
nta00190 Oxidative phosphorylation 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 3989340 3989252 5333108 120579888 25480042 4929717 4929768 844715 1466248 117129787 117126247 117129786 4025017 121212549 125600259 125600258 4271165 4271167 3950378 3950481 4099888 4099925 800485 800486 142169795
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