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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   142169795   protein Ycf2-like 
 sly-u.5   ycf2   hypothetical chloroplast RF2 
 sly-u.5   ycf2   hypothetical chloroplast RF2 
 ath-u.5   ycf2   Ycf2 
 ath-u.5   ycf2   Ycf2 
 gma-u.5   ycf2   Ycf2 
 gma-u.5   ycf2   Ycf2 
 vvi-u.5   ycf2   Ycf2 
 vvi-u.5   ycf2   Ycf2 
 ppo-u.5   ycf2   Ycf2 
 ppo-u.5   ycf2   Ycf2 
 mtr-u.5   ycf2   hypothetical chloroplast RF2 
 mtr-u.5   11444658   protein Ycf2 
 mtr-u.5   120579495   protein Ycf2 

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Top 50 coexpressed genes to 142169795 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 142169795 (nta-r.1 coexpression data)

CoexMap"142169795"


ntaLOC142169795 | Entrez gene ID : 142169795    
Species nta sly ath gma vvi ppo mtr tae osa hvu zma ghi bdi cit bra sbi bna cre sot
Paralog 1 2 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009772 [list] [network] photosynthetic electron transport in photosystem II  (2 genes)  IEA  
GO:0019684 [list] [network] photosynthesis, light reaction  (123 genes)  IEA  
GO CC
GO MF
GO:0016887 [list] [network] ATP hydrolysis activity  (824 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (3859 genes)  IEA  
Protein XP_075087811.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 8,  nucl 1  (predict for XP_075087811.1)
Subcellular
localization
TargetP
other 6  (predict for XP_075087811.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
142169795

.
sly-u.5
for
ycf2

.
sly-u.5
for
ycf2

.
ath-u.5
for
ycf2

.
ath-u.5
for
ycf2

.
gma-u.5
for
ycf2

.
gma-u.5
for
ycf2

.
vvi-u.5
for
ycf2

.
vvi-u.5
for
ycf2

.
ppo-u.5
for
ycf2

.
ppo-u.5
for
ycf2

.
mtr-u.5
for
ycf2

.
mtr-u.5
for
11444658

.
mtr-u.5
for
120579495

.


Ortholog ID: 837
Species ath ath gma gma sly sly bra bra ppo mtr mtr ghi bna sot sot cit cit nta nta
Symbol ycf2 ycf2 ycf2 ycf2 ycf2 ycf2 LOC117129786 LOC117129787 ycf2 LOC120579888 LOC25480042 LOC121212549 LOC125600258 ycf2 ycf2 ycf2 ycf2 LOC142169795 ycf2
Function* Ycf2 Ycf2 Ycf2 Ycf2 hypothetical chloroplast RF2 hypothetical chloroplast RF2 protein Ycf2 protein Ycf2 Ycf2 protein Ycf2 protein Ycf2 protein Ycf2-like protein Ycf2-like Ycf2 Ycf2 Ycf2 Ycf2 protein Ycf2-like Ycf2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath03020 RNA polymerase 3
ath00195 Photosynthesis 2
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath03020 RNA polymerase 3
ath00195 Photosynthesis 2
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 6
gma03020 RNA polymerase 4
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 6
gma03020 RNA polymerase 2
gma00195 Photosynthesis 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 4
sly03020 RNA polymerase 3
sly00190 Oxidative phosphorylation 3
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 4
sly03010 Ribosome 4
sly00190 Oxidative phosphorylation 3
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 3
bra00195 Photosynthesis 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 3
bra00195 Photosynthesis 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 9
ppo03020 RNA polymerase 4
ppo03010 Ribosome 3
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 5
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
bna03020 RNA polymerase 3
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 7
sot00190 Oxidative phosphorylation 3
sot03020 RNA polymerase 3
sot00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot00190 Oxidative phosphorylation 4
sot00195 Photosynthesis 3
sot03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 11
nta00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03010 Ribosome 3
nta00195 Photosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 1466248 844715 3989252 3989340 3950378 3950481 117129786 117129787 4929717 120579888 25480042 121212549 125600258 4099888 4099925 4271165 4271167 142169795 800485
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