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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123444516   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 tae-r.2   123062184   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 tae-r.2   123070917   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 tae-r.2   123079300   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 bdi-r.1   100840007   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 osa-u.5   4325601   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 
 zma-u.5   100275546   plastid transcriptionally active chromosome 12-like protein 
 sbi-r.1   8072126   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 
 ath-u.5   PTAC12   plastid transcriptionally active 12 
 gma-u.5   100798194   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 sly-u.5   101055518   Hop-interacting protein THI030 
 vvi-u.5   100251522   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 ppo-u.5   7470815   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 mtr-u.5   11438320   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 ghi-r.1   107960741   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 ghi-r.1   107905983   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 bna-r.1   106447486   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 bna-r.1   106396188   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 bna-r.1   125609351   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 
 sot-r.1   102587072   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 
 cit-r.1   102620035   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 nta-r.1   107778483   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 nta-r.1   107794404   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 

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Top 50 coexpressed genes to 123444516 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123444516 (hvu-r.1 coexpression data)

CoexMap"123444516"


hvuLOC123444516 | Entrez gene ID : 123444516    
Species hvu tae bdi osa zma sbi ath gma sly vvi ppo mtr ghi bna sot cit nta cre bra
Paralog 1 3 1 1 1 1 1 1 1 1 1 1 2 3 1 1 2 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090228 [list] [network] positive regulation of red or far-red light signaling pathway  (1 genes)  IEA  
GO:0042793 [list] [network] plastid transcription  (6 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (113 genes)  IEA  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (222 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (755 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3241 genes)  IEA  
GO MF
Protein XP_044977184.1 [sequence] [blastp]
XP_044977185.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_044977184.1)
chlo 9  (predict for XP_044977185.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_044977184.1)
chlo 9  (predict for XP_044977185.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123444516
tae-r.2
for
123062184
tae-r.2
for
123070917
tae-r.2
for
123079300
bdi-r.1
for
100840007
osa-u.5
for
4325601
zma-u.5
for
100275546
sbi-r.1
for
8072126
ath-u.5
for
PTAC12
gma-u.5
for
100798194
sly-u.5
for
101055518
vvi-u.5
for
100251522
ppo-u.5
for
7470815
mtr-u.5
for
11438320
ghi-r.1
for
107960741
ghi-r.1
for
107905983
bna-r.1
for
106447486
bna-r.1
for
106396188
bna-r.1
for
125609351
sot-r.1
for
102587072
cit-r.1
for
102620035
nta-r.1
for
107778483
nta-r.1
for
107794404


Ortholog ID: 10694
Species hvu tae tae tae bdi osa zma sbi ath gma sly vvi ppo mtr ghi ghi bna bna bna sot cit nta nta
Symbol LOC123444516 LOC123062184 LOC123070917 LOC123079300 LOC100840007 LOC4325601 LOC100275546 LOC8072126 PTAC12 LOC100798194 LOC101055518 LOC100251522 LOC7470815 LOC11438320 LOC107960741 LOC107905983 LOC106447486 LOC106396188 LOC125609351 LOC102587072 LOC102620035 LOC107778483 LOC107794404
Function* protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like plastid transcriptionally active chromosome 12-like protein protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 plastid transcriptionally active 12 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic Hop-interacting protein THI030 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 2
tae04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123444516 123062184 123070917 123079300 100840007 4325601 100275546 8072126 818029 100798194 101055518 100251522 7470815 11438320 107960741 107905983 106447486 106396188 125609351 102587072 102620035 107778483 107794404
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