ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	125609351	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like
bna-r.1	106447486	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
bna-r.1	106396188	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
ath-u.5	PTAC12	plastid transcriptionally active 12
ghi-r.1	107960741	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
ghi-r.1	107905983	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
cit-r.1	102620035	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
gma-u.5	100798194	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
vvi-u.5	100251522	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
ppo-u.5	7470815	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
mtr-u.5	11438320	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
sly-u.5	101055518	Hop-interacting protein THI030
sot-r.1	102587072	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12
nta-r.1	107778483	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
nta-r.1	107794404	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
osa-u.5	4325601	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like
zma-u.5	100275546	plastid transcriptionally active chromosome 12-like protein
tae-r.2	123079300	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
tae-r.2	123070917	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
tae-r.2	123062184	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
hvu-r.1	123444516	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
sbi-r.1	8072126	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12
bdi-r.1	100840007	protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic

Annotation

functional annotation

KEGG

GO BP

GO:0090228 [list] [network] positive regulation of red or far-red light signaling pathway	(3 genes)	IEA
GO:0042793 [list] [network] plastid transcription	(12 genes)	IEA
GO:0009416 [list] [network] response to light stimulus	(379 genes)	IEA
GO:0045893 [list] [network] positive regulation of DNA-templated transcription	(935 genes)	IEA

GO CC

GO:0009507 [list] [network] chloroplast	(1821 genes)	IEA
GO:0005634 [list] [network] nucleus	(9971 genes)	IEA

GO MF

Protein

XP_048636637.1 [sequence] [blastp]
XP_048636638.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_048636637.1)
nucl 9	(predict for XP_048636638.1)

Subcellular
localization
TargetP

other 7	(predict for XP_048636637.1)
other 7	(predict for XP_048636638.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 125609351	bna-r.1 for 106447486	bna-r.1 for 106396188	ath-u.5 for PTAC12	ghi-r.1 for 107960741	ghi-r.1 for 107905983	cit-r.1 for 102620035	gma-u.5 for 100798194	vvi-u.5 for 100251522	ppo-u.5 for 7470815	mtr-u.5 for 11438320	sly-u.5 for 101055518	sot-r.1 for 102587072	nta-r.1 for 107778483	nta-r.1 for 107794404	osa-u.5 for 4325601	zma-u.5 for 100275546	tae-r.2 for 123079300	tae-r.2 for 123070917	tae-r.2 for 123062184	hvu-r.1 for 123444516	sbi-r.1 for 8072126	bdi-r.1 for 100840007

Ortholog

Ortholog ID: 10694

Species

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

PTAC12

Function^*

protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like