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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-r.5   11416962   pentatricopeptide repeat-containing protein At3g18020 
 mtr-u.5   11416962   pentatricopeptide repeat-containing protein At3g18020 
 mtr-m.5   11416962   pentatricopeptide repeat-containing protein At3g18020 
 gma-u.5   106796792   pentatricopeptide repeat-containing protein At3g18020 
 ppo-u.5   7462491   pentatricopeptide repeat-containing protein At3g18020 
 ath-u.5   AT3G18020   Pentatricopeptide repeat (PPR) superfamily protein 
 vvi-u.5   100258348   pentatricopeptide repeat-containing protein At3g18020 
 bna-r.1   106422512   pentatricopeptide repeat-containing protein At3g18020-like 
 bna-r.1   106392069   pentatricopeptide repeat-containing protein At3g18020 
 cit-r.1   102627267   pentatricopeptide repeat-containing protein At3g18020 
 sly-u.5   101244857   pentatricopeptide repeat-containing protein 
 sot-r.1   102598679   pentatricopeptide repeat-containing protein At3g18020 
 nta-r.1   107771852   uncharacterized LOC107771852 
 nta-r.1   107805054   uncharacterized LOC107805054 
 osa-u.5   4344262   pentatricopeptide repeat-containing protein At3g18020 
 zma-u.5   103647935   pentatricopeptide repeat-containing protein At3g18020 
 tae-r.2   123051580   pentatricopeptide repeat-containing protein At3g18020 
 hvu-r.1   123424743   pentatricopeptide repeat-containing protein At3g18020 
 sbi-r.1   8078542   pentatricopeptide repeat-containing protein At3g18020 
 bdi-r.1   112268962   pentatricopeptide repeat-containing protein At3g18020 

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Top 50 coexpressed genes to 11416962 (mtr-r.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11416962 (mtr-r.5 coexpression data)

CoexMap"11416962"


mtrLOC11416962 | Entrez gene ID : 11416962      
Species mtr gma ppo ath vvi bna cit sly sot nta osa zma tae hvu sbi bdi cre bra ghi
Paralog 3 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (294 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_024625666.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  mito 1,  cyto_mito 1  (predict for XP_024625666.1)
Subcellular
localization
TargetP
mito 2  (predict for XP_024625666.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-r.5
for
11416962
mtr-u.5
for
11416962
mtr-m.5
for
11416962
gma-u.5
for
106796792
ppo-u.5
for
7462491
ath-u.5
for
AT3G18020
vvi-u.5
for
100258348
bna-r.1
for
106422512
bna-r.1
for
106392069
cit-r.1
for
102627267
sly-u.5
for
101244857
sot-r.1
for
102598679
nta-r.1
for
107771852
nta-r.1
for
107805054
osa-u.5
for
4344262
zma-u.5
for
103647935
tae-r.2
for
123051580
hvu-r.1
for
123424743
sbi-r.1
for
8078542
bdi-r.1
for
112268962


Ortholog ID: 12196
Species mtr gma ppo ath vvi bna bna cit sly sot nta nta osa zma tae hvu sbi bdi
Symbol LOC11416962 LOC106796792 LOC7462491 AT3G18020 LOC100258348 LOC106422512 LOC106392069 LOC102627267 LOC101244857 LOC102598679 LOC107771852 LOC107805054 LOC4344262 LOC103647935 LOC123051580 LOC123424743 LOC8078542 LOC112268962
Function* pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020-like pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At3g18020 uncharacterized LOC107771852 uncharacterized LOC107805054 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03030 DNA replication 2
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11416962 106796792 7462491 821326 100258348 106422512 106392069 102627267 101244857 102598679 107771852 107805054 4344262 103647935 123051580 123424743 8078542 112268962
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