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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11409136   RNA pseudouridine synthase 5 
 mtr-r.5   11409136   RNA pseudouridine synthase 5 
 mtr-m.5   11409136   RNA pseudouridine synthase 5 
 gma-u.5   100810058   RNA pseudouridine synthase 5 
 ppo-u.5   7457877   RNA pseudouridine synthase 5 
 ath-u.5   AT3G52260   Pseudouridine synthase family protein 
 vvi-u.5   100265032   RNA pseudouridine synthase 5 
 sly-u.5   101246017   RNA pseudouridine synthase 5 
 osa-u.5   4332490   RNA pseudouridine synthase 5-like 
 zma-u.5   100272393   uncharacterized LOC100272393 

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Top 50 coexpressed genes to 11409136 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11409136 (mtr-u.5 coexpression data)

CoexMap"11409136"


mtrLOC11409136 | Entrez gene ID : 11409136      
Species mtr gma ppo ath vvi sly osa zma nta bna tae bdi sot bra sbi hvu cit cre ghi
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000455 [list] [network] enzyme-directed rRNA pseudouridine synthesis  (8 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1400 genes)  IEA  
Protein XP_003591952.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  cysk 2  (predict for XP_003591952.2)
Subcellular
localization
TargetP
other 9  (predict for XP_003591952.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11409136

.
mtr-r.5
for
11409136

.
mtr-m.5
for
11409136

.
gma-u.5
for
100810058

.
ppo-u.5
for
7457877

.
ath-u.5
for
AT3G52260

.
vvi-u.5
for
100265032

.
sly-u.5
for
101246017

.
osa-u.5
for
4332490

.
zma-u.5
for
100272393

.


Ortholog ID: 9537
Species ath gma sly osa zma bra vvi ppo mtr tae hvu ghi ghi cre sbi sot cit bdi nta nta
Symbol AT3G52260 LOC100810058 LOC101246017 LOC4332490 LOC100272393 LOC103860749 LOC100265032 LOC7457877 LOC11409136 LOC123092486 LOC123448930 LOC121230750 LOC107891176 CHLRE_16g689100v5 LOC110432012 LOC102596314 LOC102607668 LOC100842617 LOC107814662 LOC107809259
Function* Pseudouridine synthase family protein RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5-like uncharacterized LOC100272393 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 uncharacterized protein RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
gma00860 Porphyrin metabolism 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00510 N-Glycan biosynthesis 2
osa00513 Various types of N-glycan biosynthesis 2
osa04141 Protein processing in endoplasmic reticulum 2
osa00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00280 Valine, leucine and isoleucine degradation 4
vvi00640 Propanoate metabolism 4
vvi00410 beta-Alanine metabolism 3
vvi01200 Carbon metabolism 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03013 Nucleocytoplasmic transport 3
cit03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03450 Non-homologous end-joining 2
bdi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 3
nta03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824391 100810058 101246017 4332490 100272393 103860749 100265032 7457877 11409136 123092486 123448930 121230750 107891176 5724809 110432012 102596314 102607668 100842617 107814662 107809259
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