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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-m.8   4342137   phytoene synthase 2, chloroplastic 
 osa-u.5   4342137   phytoene synthase 2, chloroplastic 
 osa-r.6   4342137   phytoene synthase 2, chloroplastic 
 osa-e.1   4342137   phytoene synthase 2, chloroplastic 
 osa-u.5   4347813   phytoene synthase 2, chloroplastic 
 osa-u.5   4352846   phytoene synthase 2, chloroplastic 
 tae-r.2   123156221   phytoene synthase 1, chloroplastic 
 tae-r.2   123113055   phytoene synthase 2, chloroplastic 
 tae-r.2   123102037   phytoene synthase 2, chloroplastic 
 hvu-r.1   123408513   phytoene synthase 1, chloroplastic-like 
 hvu-r.1   123397703   phytoene synthase 2, chloroplastic-like 
 hvu-r.1   123451928   phytoene synthase 2, chloroplastic-like 
 bdi-r.1   100844630   phytoene synthase 2, chloroplastic 
 bdi-r.1   100832896   phytoene synthase 2, chloroplastic 
 bdi-r.1   100831790   phytoene synthase 2, chloroplastic 
 zma-u.5   109940986   phytoene synthase 3, chloroplastic-like 
 zma-u.5   542686   phytoene synthase 2 
 zma-u.5   100136882   yellow endosperm 1 
 sbi-r.1   8071502   phytoene synthase 2, chloroplastic 
 sbi-r.1   110431022   phytoene synthase, chloroplastic 
 sbi-r.1   8077239   phytoene synthase 2, chloroplastic 
 ath-u.5   PSY   PHYTOENE SYNTHASE 
 gma-u.5   100807453   phytoene synthase 2, chloroplastic 
 gma-u.5   100817119   phytoene synthase 2, chloroplastic 
 sly-u.5   PSY2   phytoene synthase 2, chloroplastic 
 sly-u.5   Psy1   phytoene synthase 1, chloroplastic 
 bra-r.6   103856237   phytoene synthase, chloroplastic 
 bra-r.6   103851090   phytoene synthase, chloroplastic 
 bra-r.6   103846262   phytoene synthase, chloroplastic 
 vvi-u.5   100246195   phytoene synthase 2, chloroplastic 
 vvi-u.5   100252385   phytoene synthase 2, chloroplastic 
 vvi-u.5   100262162   phytoene synthase 2, chloroplastic 
 ppo-u.5   18106554   phytoene synthase 2, chloroplastic 
 ppo-u.5   7480715   phytoene synthase 2, chloroplastic 
 mtr-u.5   11421788   phytoene synthase 2, chloroplastic 
 mtr-u.5   11426744   phytoene synthase 2, chloroplastic 
 mtr-u.5   11437285   phytoene synthase 2, chloroplastic 
 ghi-r.1   121221084   phytoene synthase 2, chloroplastic 
 ghi-r.1   107959745   phytoene synthase 2, chloroplastic 
 bna-r.1   125594970   phytoene synthase, chloroplastic-like 
 bna-r.1   106354425   phytoene synthase, chloroplastic-like 
 bna-r.1   111213688   phytoene synthase, chloroplastic 
 sot-r.1   102589336   phytoene synthase 2, chloroplastic 
 sot-r.1   102593756   phytoene synthase 1, chloroplastic 
 cit-r.1   102578001   phytoene synthase 
 nta-r.1   107824030   phytoene synthase 2, chloroplastic-like 
 nta-r.1   107797025   phytoene synthase 2, chloroplastic 
 nta-r.1   107793151   phytoene synthase 2, chloroplastic-like 
 cre-r.1   CHLRE_02g095092v5   uncharacterized protein 

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Top 50 coexpressed genes to 4342137 (osa-m.8 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4342137 (osa-m.8 coexpression data)

CoexMap"4342137"


osaLOC4342137 | Entrez gene ID : 4342137      
Species osa tae hvu bdi zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 6 3 3 3 3 3 1 2 2 3 3 2 3 2 3 2 1 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG osa00906 [list] [network] Carotenoid biosynthesis (40 genes)
GO BP
GO:0016117 [list] [network] carotenoid biosynthetic process  (16 genes)  IEA  
GO CC
GO MF
GO:0046905 [list] [network] 15-cis-phytoene synthase activity  (2 genes)  IEA  
GO:0004311 [list] [network] geranylgeranyl diphosphate synthase activity  (4 genes)  IEA  
Protein NP_001389894.1 [sequence] [blastp]
XP_015642514.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 4,  plas 1,  extr 1  (predict for NP_001389894.1)
cyto 5,  chlo 4,  plas 1,  extr 1  (predict for XP_015642514.1)
Subcellular
localization
TargetP
chlo 2  (predict for NP_001389894.1)
chlo 2  (predict for XP_015642514.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-m.8
for
4342137
osa-u.5
for
4342137
osa-r.6
for
4342137
osa-e.1
for
4342137
osa-u.5
for
4347813
osa-u.5
for
4352846
tae-r.2
for
123156221
tae-r.2
for
123113055
tae-r.2
for
123102037
hvu-r.1
for
123408513
hvu-r.1
for
123397703
hvu-r.1
for
123451928
bdi-r.1
for
100844630
bdi-r.1
for
100832896
bdi-r.1
for
100831790
zma-u.5
for
109940986
zma-u.5
for
542686
zma-u.5
for
100136882
sbi-r.1
for
8071502
sbi-r.1
for
110431022
sbi-r.1
for
8077239
ath-u.5
for
PSY
gma-u.5
for
100807453
gma-u.5
for
100817119
sly-u.5
for
PSY2
sly-u.5
for
Psy1
bra-r.6
for
103856237
bra-r.6
for
103851090
bra-r.6
for
103846262
vvi-u.5
for
100246195
vvi-u.5
for
100252385
vvi-u.5
for
100262162
ppo-u.5
for
18106554
ppo-u.5
for
7480715
mtr-u.5
for
11421788
mtr-u.5
for
11426744
mtr-u.5
for
11437285
ghi-r.1
for
121221084
ghi-r.1
for
107959745
bna-r.1
for
125594970
bna-r.1
for
106354425
bna-r.1
for
111213688
sot-r.1
for
102589336
sot-r.1
for
102593756
cit-r.1
for
102578001
nta-r.1
for
107824030
nta-r.1
for
107797025
nta-r.1
for
107793151
cre-r.1
for
CHLRE_02g095092v5


Ortholog ID: 1518
Species osa osa osa tae tae tae hvu hvu hvu bdi bdi bdi zma zma zma sbi sbi sbi ath gma gma sly sly bra bra bra vvi vvi vvi ppo mtr mtr mtr ghi ghi ghi bna bna bna sot sot cit nta nta nta cre
Symbol LOC4342137 LOC4347813 LOC4352846 LOC123110153 LOC123119179 LOC123149840 LOC123408513 LOC123397703 LOC123451928 LOC100844630 LOC100832896 LOC100831790 LOC109940986 LOC542686 LOC100136882 LOC8071502 LOC110431022 LOC8077239 PSY LOC100807453 LOC100776503 PSY2 Psy1 LOC103856237 LOC103851090 LOC103846262 LOC100246195 LOC100252385 LOC100262162 LOC7480715 LOC11421788 LOC11426744 LOC25490580 LOC107953940 LOC107914299 LOC107900428 LOC125594970 LOC106386282 LOC106387714 LOC102589336 LOC102593756 LOC102578001 LOC107797025 LOC107772713 LOC107761716 CHLRE_02g095092v5
Function* phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 1, chloroplastic phytoene synthase 1, chloroplastic-like phytoene synthase 2, chloroplastic-like phytoene synthase 2, chloroplastic-like phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 3, chloroplastic-like phytoene synthase 2 yellow endosperm 1 phytoene synthase 2, chloroplastic phytoene synthase, chloroplastic phytoene synthase 2, chloroplastic PHYTOENE SYNTHASE phytoene synthase 2, chloroplastic phytoene synthase, chloroplastic-like phytoene synthase 2, chloroplastic phytoene synthase 1, chloroplastic phytoene synthase, chloroplastic phytoene synthase, chloroplastic phytoene synthase, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic-like phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase, chloroplastic-like phytoene synthase, chloroplastic-like phytoene synthase, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 1, chloroplastic phytoene synthase phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic-like phytoene synthase 2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 4
osa00561 Glycerolipid metabolism 2
osa00566 Sulfoquinovose metabolism 2
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 8
osa04016 MAPK signaling pathway - plant 6
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 5
tae01200 Carbon metabolism 5
tae01230 Biosynthesis of amino acids 4
tae00906 Carotenoid biosynthesis 4
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 5
tae01200 Carbon metabolism 5
tae00906 Carotenoid biosynthesis 5
tae00020 Citrate cycle (TCA cycle) 3
tae00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 9
tae01240 Biosynthesis of cofactors 7
tae00730 Thiamine metabolism 3
tae00900 Terpenoid backbone biosynthesis 3
tae00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 5
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 6
bdi00195 Photosynthesis 4
bdi00196 Photosynthesis - antenna proteins 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00460 Cyanoamino acid metabolism 2
bdi00500 Starch and sucrose metabolism 2
bdi00999 Biosynthesis of various plant secondary metabolites 2
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 3
bdi00520 Amino sugar and nucleotide sugar metabolism 2
bdi01250 Biosynthesis of nucleotide sugars 2
bdi00053 Ascorbate and aldarate metabolism 2
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 5
zma00906 Carotenoid biosynthesis 5
zma04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 4
zma01240 Biosynthesis of cofactors 4
zma00051 Fructose and mannose metabolism 3
zma00520 Amino sugar and nucleotide sugar metabolism 3
zma01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 3
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 3
sbi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 6
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
gma00260 Glycine, serine and threonine metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma01200 Carbon metabolism 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 5
gma01200 Carbon metabolism 5
gma00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 3
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 3
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra00906 Carotenoid biosynthesis 3
bra00195 Photosynthesis 3
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 14
vvi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 3
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 2
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 4
mtr04981 Folate transport and metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr01200 Carbon metabolism 3
mtr00860 Porphyrin metabolism 3
mtr01240 Biosynthesis of cofactors 3
mtr00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 9
ghi00196 Photosynthesis - antenna proteins 7
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 3
ghi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 6
bna00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 6
bna00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 6
bna00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00906 Carotenoid biosynthesis 3
cre00900 Terpenoid backbone biosynthesis 2
cre00190 Oxidative phosphorylation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4342137 4347813 4352846 123110153 123119179 123149840 123408513 123397703 123451928 100844630 100832896 100831790 109940986 542686 100136882 8071502 110431022 8077239 831587 100807453 100776503 543964 543988 103856237 103851090 103846262 100246195 100252385 100262162 7480715 11421788 11426744 25490580 107953940 107914299 107900428 125594970 106386282 106387714 102589336 102593756 102578001 107797025 107772713 107761716 5726776
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