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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5   4342137   phytoene synthase 2, chloroplastic 
 osa-r.6   4342137   phytoene synthase 2, chloroplastic 
 osa-m.8   4342137   phytoene synthase 2, chloroplastic 
 osa-e.1   4342137   phytoene synthase 2, chloroplastic 
 osa-u.5   4347813   phytoene synthase 2, chloroplastic 
 osa-u.5   4352846   phytoene synthase 2, chloroplastic 
 zma-u.5   109940986   phytoene synthase 3, chloroplastic-like 
 zma-u.5   542686   phytoene synthase 2 
 zma-u.5   100136882   yellow endosperm 1 
 ath-u.5   PSY   PHYTOENE SYNTHASE 
 gma-u.5   100807453   phytoene synthase 2, chloroplastic 
 gma-u.5   100817119   phytoene synthase 2, chloroplastic 
 sly-u.5   PSY2   phytoene synthase 2, chloroplastic 
 sly-u.5   Psy1   phytoene synthase 1, chloroplastic 
 vvi-u.5   100246195   phytoene synthase 2, chloroplastic 
 vvi-u.5   100252385   phytoene synthase 2, chloroplastic 
 vvi-u.5   100262162   phytoene synthase 2, chloroplastic 
 ppo-u.5   18106554   phytoene synthase 2, chloroplastic 
 ppo-u.5   7480715   phytoene synthase 2, chloroplastic 
 mtr-u.5   11421788   phytoene synthase 2, chloroplastic 
 mtr-u.5   11426744   phytoene synthase 2, chloroplastic 
 mtr-u.5   11437285   phytoene synthase 2, chloroplastic 

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Top 50 coexpressed genes to 4342137 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4342137 (osa-u.5 coexpression data)

CoexMap"4342137"


osaLOC4342137 | Entrez gene ID : 4342137      
Species osa zma ath gma sly vvi ppo mtr tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 6 3 1 2 2 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG osa00906 [list] [network] Carotenoid biosynthesis (40 genes)
GO BP
GO:0016117 [list] [network] carotenoid biosynthetic process  (16 genes)  IEA  
GO CC
GO MF
GO:0046905 [list] [network] 15-cis-phytoene synthase activity  (2 genes)  IEA  
GO:0004311 [list] [network] geranylgeranyl diphosphate synthase activity  (4 genes)  IEA  
Protein NP_001389894.1 [sequence] [blastp]
XP_015642514.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 4,  plas 1,  extr 1  (predict for NP_001389894.1)
cyto 5,  chlo 4,  plas 1,  extr 1  (predict for XP_015642514.1)
Subcellular
localization
TargetP
chlo 2  (predict for NP_001389894.1)
chlo 2  (predict for XP_015642514.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.5
for
4342137

.
osa-r.6
for
4342137

.
osa-m.8
for
4342137

.
osa-e.1
for
4342137

.
osa-u.5
for
4347813

.
osa-u.5
for
4352846

.
zma-u.5
for
109940986

.
zma-u.5
for
542686

.
zma-u.5
for
100136882

.
ath-u.5
for
PSY

.
gma-u.5
for
100807453

.
gma-u.5
for
100817119

.
sly-u.5
for
PSY2

.
sly-u.5
for
Psy1

.
vvi-u.5
for
100246195

.
vvi-u.5
for
100252385

.
vvi-u.5
for
100262162

.
ppo-u.5
for
18106554

.
ppo-u.5
for
7480715

.
mtr-u.5
for
11421788

.
mtr-u.5
for
11426744

.
mtr-u.5
for
11437285

.


Ortholog ID: 1518
Species ath gma gma sly osa osa zma zma bra bra vvi vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol PSY LOC100807453 LOC100776503 PSY2 LOC4352846 LOC4342137 LOC100136882 LOC542686 LOC103851090 LOC103856237 LOC100262162 LOC100246195 LOC7480715 LOC11421788 LOC25490580 LOC123110153 LOC123149840 LOC123451928 LOC123397703 LOC107900428 LOC107953940 LOC106387714 LOC125594970 CHLRE_02g095092v5 LOC110431022 LOC8071502 LOC102589336 LOC102578001 LOC100831790 LOC100844630 LOC107797025 LOC107772713
Function* PHYTOENE SYNTHASE phytoene synthase 2, chloroplastic phytoene synthase, chloroplastic-like phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic yellow endosperm 1 phytoene synthase 2 phytoene synthase, chloroplastic phytoene synthase, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 1, chloroplastic phytoene synthase 2, chloroplastic-like phytoene synthase 2, chloroplastic-like phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic-like phytoene synthase, chloroplastic phytoene synthase, chloroplastic-like uncharacterized protein phytoene synthase, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic phytoene synthase 2, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 6
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
gma00260 Glycine, serine and threonine metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma01200 Carbon metabolism 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 5
gma01200 Carbon metabolism 5
gma00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 3
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 4
osa00561 Glycerolipid metabolism 2
osa00566 Sulfoquinovose metabolism 2
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 4
zma01240 Biosynthesis of cofactors 4
zma00051 Fructose and mannose metabolism 3
zma00520 Amino sugar and nucleotide sugar metabolism 3
zma01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra00906 Carotenoid biosynthesis 3
bra00195 Photosynthesis 3
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 3
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 14
vvi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 2
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr01200 Carbon metabolism 3
mtr00860 Porphyrin metabolism 3
mtr01240 Biosynthesis of cofactors 3
mtr00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 5
tae01200 Carbon metabolism 5
tae01230 Biosynthesis of amino acids 4
tae00906 Carotenoid biosynthesis 4
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 9
tae01240 Biosynthesis of cofactors 7
tae00730 Thiamine metabolism 3
tae00900 Terpenoid backbone biosynthesis 3
tae00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 3
ghi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 9
ghi00196 Photosynthesis - antenna proteins 7
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 6
bna00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 6
bna00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00906 Carotenoid biosynthesis 3
cre00900 Terpenoid backbone biosynthesis 2
cre00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 3
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 3
bdi00520 Amino sugar and nucleotide sugar metabolism 2
bdi01250 Biosynthesis of nucleotide sugars 2
bdi00053 Ascorbate and aldarate metabolism 2
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 6
bdi00195 Photosynthesis 4
bdi00196 Photosynthesis - antenna proteins 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831587 100807453 100776503 543964 4352846 4342137 100136882 542686 103851090 103856237 100262162 100246195 7480715 11421788 25490580 123110153 123149840 123451928 123397703 107900428 107953940 106387714 125594970 5726776 110431022 8071502 102589336 102578001 100831790 100844630 107797025 107772713
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