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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   VPS11   vacuolar protein sorting 11 
 ath-u.5   VPS11   vacuolar protein sorting 11 
 ath-r.7   VPS11   vacuolar protein sorting 11 
 ath-e.2   VPS11   vacuolar protein sorting 11 
 ath-m.4.bio   VPS11   vacuolar protein sorting 11 
 ath-m.4.hor   VPS11   vacuolar protein sorting 11 
 ath-m.4.lig   VPS11   vacuolar protein sorting 11 
 ath-m.4.str   VPS11   vacuolar protein sorting 11 
 ath-m.4.tis   VPS11   vacuolar protein sorting 11 
 bra-r.6   103828521   vacuolar protein-sorting-associated protein 11 homolog 
 bna-r.1   106357778   vacuolar protein-sorting-associated protein 11 homolog 
 bna-r.1   111212423   vacuolar protein-sorting-associated protein 11 homolog 
 ghi-r.1   107923903   vacuolar protein-sorting-associated protein 11 homolog 
 ghi-r.1   107912600   vacuolar protein-sorting-associated protein 11 homolog 
 cit-r.1   102608971   vacuolar protein-sorting-associated protein 11 homolog 
 gma-u.5   100793279   vacuolar protein-sorting-associated protein 11 homolog 
 gma-u.5   100778100   vacuolar protein-sorting-associated protein 11 homolog 
 vvi-u.5   100266606   vacuolar protein-sorting-associated protein 11 homolog 
 ppo-u.5   7455999   vacuolar protein-sorting-associated protein 11 homolog 
 mtr-u.5   11417879   vacuolar protein-sorting-associated protein 11 homolog 
 sly-u.5   101255601   vacuolar protein-sorting-associated protein 11 homolog 
 sot-r.1   102588597   vacuolar protein-sorting-associated protein 11 homolog 
 nta-r.1   107819023   vacuolar protein-sorting-associated protein 11 homolog 
 nta-r.1   107814755   vacuolar protein-sorting-associated protein 11 homolog 
 osa-u.5   4335642   vacuolar protein-sorting-associated protein 11 homolog 
 zma-u.5   100217064   Vacuolar protein-sorting-associated protein 11-like protein 
 tae-r.2   123053132   vacuolar protein-sorting-associated protein 11 homolog 
 tae-r.2   123045293   vacuolar protein-sorting-associated protein 11 homolog 
 tae-r.2   123189041   vacuolar protein-sorting-associated protein 11 homolog 
 hvu-r.1   123426525   vacuolar protein-sorting-associated protein 11 homolog 
 sbi-r.1   8070933   vacuolar protein-sorting-associated protein 11 homolog 
 bdi-r.1   100832824   vacuolar protein-sorting-associated protein 11 homolog 
 cre-r.1   CHLRE_02g095074v5   uncharacterized protein 

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Top 50 coexpressed genes to VPS11 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VPS11 (ath-m.9 coexpression data)

CoexMap"815065"


athVPS11 | Entrez gene ID : 815065      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04148 [list] [network] Efferocytosis (53 genes)
GO BP
GO:0007033 [list] [network] vacuole organization  (45 genes)  TAS  
GO CC
GO:0033263 [list] [network] CORVET complex  (6 genes)  IDA  
GO:0030897 [list] [network] HOPS complex  (7 genes)  IDA  
GO:0009705 [list] [network] plant-type vacuole membrane  (117 genes)  IDA  
GO:0032991 [list] [network] protein-containing complex  (1548 genes)  IPI  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_027676.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 2,  nucl 1,  E.R._plas 1,  chlo 1,  plas 1,  cysk_nucl 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for NP_027676.1)
Subcellular
localization
TargetP
other 9  (predict for NP_027676.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
VPS11
ath-u.5
for
VPS11
ath-r.7
for
VPS11
ath-e.2
for
VPS11
ath-m.4.bio
for
VPS11
ath-m.4.hor
for
VPS11
ath-m.4.lig
for
VPS11
ath-m.4.str
for
VPS11
ath-m.4.tis
for
VPS11
bra-r.6
for
103828521
bna-r.1
for
106357778
bna-r.1
for
111212423
ghi-r.1
for
107923903
ghi-r.1
for
107912600
cit-r.1
for
102608971
gma-u.5
for
100793279
gma-u.5
for
100778100
vvi-u.5
for
100266606
ppo-u.5
for
7455999
mtr-u.5
for
11417879
sly-u.5
for
101255601
sot-r.1
for
102588597
nta-r.1
for
107819023
nta-r.1
for
107814755
osa-u.5
for
4335642
zma-u.5
for
100217064
tae-r.2
for
123053132
tae-r.2
for
123045293
tae-r.2
for
123189041
hvu-r.1
for
123426525
sbi-r.1
for
8070933
bdi-r.1
for
100832824
cre-r.1
for
CHLRE_02g095074v5


Ortholog ID: 9976
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol VPS11 LOC103828521 LOC106357778 LOC111212423 LOC107923903 LOC107912600 LOC102608971 LOC100793279 LOC100778100 LOC100266606 LOC7455999 LOC11417879 LOC101255601 LOC102588597 LOC107819023 LOC107814755 LOC4335642 LOC100217064 LOC123053132 LOC123045293 LOC123189041 LOC123426525 LOC8070933 LOC100832824 CHLRE_02g095074v5
Function* vacuolar protein sorting 11 vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog Vacuolar protein-sorting-associated protein 11-like protein vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 3
ath04142 Lysosome 2
ath04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
bna04130 SNARE interactions in vesicular transport 3
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 4
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 6
gma04142 Lysosome 4
gma05100 Bacterial invasion of epithelial cells 4
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 7
gma00514 Other types of O-glycan biosynthesis 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi04148 Efferocytosis 2
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr04142 Lysosome 3
mtr04148 Efferocytosis 2
mtr04144 Endocytosis 2
mtr05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 4
sly03083 Polycomb repressive complex 2
sly00510 N-Glycan biosynthesis 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 2
nta04142 Lysosome 2
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 2
nta04142 Lysosome 2
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 5
zma04145 Phagosome 5
zma04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 6
tae04120 Ubiquitin mediated proteolysis 3
tae00730 Thiamine metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 8
tae04141 Protein processing in endoplasmic reticulum 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 7
tae00730 Thiamine metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04148 Efferocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 815065 103828521 106357778 111212423 107923903 107912600 102608971 100793279 100778100 100266606 7455999 11417879 101255601 102588597 107819023 107814755 4335642 100217064 123053132 123045293 123189041 123426525 8070933 100832824 5727716
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