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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123053132   vacuolar protein-sorting-associated protein 11 homolog 
 osa-u.5   4335642   vacuolar protein-sorting-associated protein 11 homolog 
 zma-u.5   100217064   Vacuolar protein-sorting-associated protein 11-like protein 
 ath-u.5   VPS11   vacuolar protein sorting 11 
 gma-u.5   100793279   vacuolar protein-sorting-associated protein 11 homolog 
 gma-u.5   100778100   vacuolar protein-sorting-associated protein 11 homolog 
 sly-u.5   101255601   vacuolar protein-sorting-associated protein 11 homolog 
 vvi-u.5   100266606   vacuolar protein-sorting-associated protein 11 homolog 
 ppo-u.5   7455999   vacuolar protein-sorting-associated protein 11 homolog 
 mtr-u.5   11417879   vacuolar protein-sorting-associated protein 11 homolog 

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Top 50 coexpressed genes to 123053132 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123053132 (tae-r.2 coexpression data)

CoexMap"123053132"


taeLOC123053132 | Entrez gene ID : 123053132    
Species tae osa zma ath gma sly vvi ppo mtr hvu cit bra ghi sbi bdi nta bna cre sot
Paralog 1 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes04148 [list] [network] Efferocytosis (163 genes)
GO BP
GO:0006904 [list] [network] vesicle docking involved in exocytosis  (10 genes)  IEA  
GO:0007032 [list] [network] endosome organization  (20 genes)  IEA  
GO:0007033 [list] [network] vacuole organization  (98 genes)  IEA  
GO:0048284 [list] [network] organelle fusion  (144 genes)  IEA  
GO:0006886 [list] [network] intracellular protein transport  (789 genes)  IEA  
GO:0016192 [list] [network] vesicle-mediated transport  (1129 genes)  IEA  
GO CC
GO:0030897 [list] [network] HOPS complex  (17 genes)  IEA  
GO:0005768 [list] [network] endosome  (407 genes)  IEA  
GO MF
GO:0030674 [list] [network] protein-macromolecule adaptor activity  (580 genes)  IEA  
GO:0005515 [list] [network] protein binding  (16249 genes)  IEA  
Protein XP_044332469.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  plas 2,  cyto_nucl 2,  E.R. 1,  nucl_plas 1,  cysk_plas 1  (predict for XP_044332469.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044332469.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123053132
osa-u.5
for
4335642
zma-u.5
for
100217064
ath-u.5
for
VPS11
gma-u.5
for
100793279
gma-u.5
for
100778100
sly-u.5
for
101255601
vvi-u.5
for
100266606
ppo-u.5
for
7455999
mtr-u.5
for
11417879


Ortholog ID: 9976
Species tae tae hvu bdi osa zma sbi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC123189041 LOC123053132 LOC123426525 LOC100832824 LOC4335642 LOC100217064 LOC8070933 VPS11 LOC100778100 LOC100793279 LOC101255601 LOC103828521 LOC100266606 LOC7455999 LOC11417879 LOC107912600 LOC107923903 LOC106357778 LOC111212423 LOC102588597 LOC102608971 LOC107819023 LOC107814755 CHLRE_02g095074v5
Function* vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog Vacuolar protein-sorting-associated protein 11-like protein vacuolar protein-sorting-associated protein 11 homolog vacuolar protein sorting 11 vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog vacuolar protein-sorting-associated protein 11 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 7
tae00730 Thiamine metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 6
tae04120 Ubiquitin mediated proteolysis 3
tae00730 Thiamine metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 5
zma04145 Phagosome 5
zma04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 3
ath04142 Lysosome 2
ath04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 7
gma00514 Other types of O-glycan biosynthesis 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 6
gma04142 Lysosome 4
gma05100 Bacterial invasion of epithelial cells 4
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 4
sly03083 Polycomb repressive complex 2
sly00510 N-Glycan biosynthesis 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi04148 Efferocytosis 2
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr04142 Lysosome 3
mtr04148 Efferocytosis 2
mtr04144 Endocytosis 2
mtr05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 4
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
bna04130 SNARE interactions in vesicular transport 3
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 2
nta04142 Lysosome 2
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 2
nta04142 Lysosome 2
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04148 Efferocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123189041 123053132 123426525 100832824 4335642 100217064 8070933 815065 100778100 100793279 101255601 103828521 100266606 7455999 11417879 107912600 107923903 106357778 111212423 102588597 102608971 107819023 107814755 5727716
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