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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   RPT2b   AAA-type ATPase family protein 
 ath-u.5   RPT2b   AAA-type ATPase family protein 
 ath-r.7   RPT2b   AAA-type ATPase family protein 
 ath-e.2   RPT2b   AAA-type ATPase family protein 
 ath-m.4.bio   RPT2b   AAA-type ATPase family protein 
 ath-m.4.hor   RPT2b   AAA-type ATPase family protein 
 ath-m.4.lig   RPT2b   AAA-type ATPase family protein 
 ath-m.4.str   RPT2b   AAA-type ATPase family protein 
 ath-m.4.tis   RPT2b   AAA-type ATPase family protein 
 ath-u.5   RPT2a   regulatory particle AAA-ATPase 2A 
 bra-r.6   103853882   26S proteasome regulatory subunit 4 homolog A 
 bra-r.6   103834733   26S proteasome regulatory subunit 4 homolog A 
 bna-r.1   106411074   26S proteasome regulatory subunit 4 homolog B 
 bna-r.1   106398620   26S proteasome regulatory subunit 4 homolog A 
 bna-r.1   106358329   26S proteasome regulatory subunit 4 homolog A 
 ghi-r.1   107913586   26S proteasome regulatory subunit 4 homolog B 
 ghi-r.1   121219563   26S proteasome regulatory subunit 4 homolog A 
 ghi-r.1   107942549   26S proteasome regulatory subunit 4 homolog A 
 cit-r.1   102622673   26S proteasome regulatory subunit 4 homolog A 
 gma-u.5   100814975   probable 26S proteasome subunit rpt4 
 gma-u.5   100802442   26S proteasome regulatory subunit 4 homolog A 
 gma-u.5   100798835   26S proteasome regulatory subunit 4 homolog A 
 vvi-u.5   100244194   26S proteasome regulatory subunit 4 homolog A-like 
 ppo-u.5   7459523   26S proteasome regulatory subunit 4 homolog A 
 ppo-u.5   7464418   26S proteasome regulatory subunit 4 homolog A 
 mtr-u.5   25484145   26S proteasome regulatory subunit 4 homolog A 
 mtr-u.5   11419485   26S proteasome regulatory subunit 4 homolog A 
 sly-u.5   101267617   26S proteasome regulatory subunit 4 homolog A 
 sot-r.1   102604637   26S proteasome regulatory subunit 4 homolog A 
 sot-r.1   102577756   26S proteasome subunit 4-like 
 nta-r.1   107760308   26S proteasome regulatory subunit 4 homolog A-like 
 nta-r.1   107779199   26S proteasome regulatory subunit 4 homolog A 
 nta-r.1   107789506   26S proteasome regulatory subunit 4 homolog A 
 osa-u.5   4332553   26S proteasome regulatory subunit 4 homolog 
 osa-u.5   4344373   26S proteasome regulatory subunit 4 homolog 
 zma-u.5   100193364   26S protease regulatory subunit 4 homolog 
 zma-u.5   100279843   26S protease regulatory subunit 4 
 tae-r.2   123043559   26S proteasome regulatory subunit 4 homolog 
 tae-r.2   123085620   26S proteasome regulatory subunit 4 homolog 
 tae-r.2   123092406   26S proteasome regulatory subunit 4 homolog 
 hvu-r.1   123424618   26S proteasome regulatory subunit 4 homolog 
 hvu-r.1   123448871   26S proteasome regulatory subunit 4 homolog 
 sbi-r.1   8077519   26S protease regulatory subunit 4 homolog 
 bdi-r.1   100842930   26S proteasome regulatory subunit 4 homolog 
 bdi-r.1   100846138   26S proteasome regulatory subunit 4 homolog 
 bdi-r.1   104582765   26S proteasome regulatory subunit 4 homolog 
 cre-r.1   CHLRE_07g329700v5   uncharacterized protein 

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Top 50 coexpressed genes to RPT2b (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RPT2b (ath-m.9 coexpression data)

CoexMap""


athRPT2b | Entrez gene ID : 816533    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 3 1 3 1 2 2 1 2 3 2 2 3 2 1 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
Function AAA-type ATPase family protein
KEGG ath03050 [list] [network] Proteasome (61 genes)
GO BP
GO:0007292 [list] [network] female gamete generation  (13 genes)  IGI  
GO:0010078 [list] [network] maintenance of root meristem identity  (40 genes)  IMP  
GO:0048232 [list] [network] male gamete generation  (70 genes)  IGI  
GO CC
GO:0000502 [list] [network] proteasome complex  (53 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_179604.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  plas 1,  chlo 1,  nucl 1,  mito 1,  cysk 1,  chlo_mito 1,  cysk_nucl 1,  golg_plas 1,  E.R._plas 1  (predict for NP_179604.1)
Subcellular
localization
TargetP
other 9  (predict for NP_179604.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
RPT2b
ath-u.5
for
RPT2b
ath-r.7
for
RPT2b
ath-e.2
for
RPT2b
ath-m.4.bio
for
RPT2b
ath-m.4.hor
for
RPT2b
ath-m.4.lig
for
RPT2b
ath-m.4.str
for
RPT2b
ath-m.4.tis
for
RPT2b
ath-u.5
for
RPT2a
bra-r.6
for
103853882
bra-r.6
for
103834733
bna-r.1
for
106411074
bna-r.1
for
106398620
bna-r.1
for
106358329
ghi-r.1
for
107913586
ghi-r.1
for
121219563
ghi-r.1
for
107942549
cit-r.1
for
102622673
gma-u.5
for
100814975
gma-u.5
for
100802442
gma-u.5
for
100798835
vvi-u.5
for
100244194
ppo-u.5
for
7459523
ppo-u.5
for
7464418
mtr-u.5
for
25484145
mtr-u.5
for
11419485
sly-u.5
for
101267617
sot-r.1
for
102604637
sot-r.1
for
102577756
nta-r.1
for
107760308
nta-r.1
for
107779199
nta-r.1
for
107789506
osa-u.5
for
4332553
osa-u.5
for
4344373
zma-u.5
for
100193364
zma-u.5
for
100279843
tae-r.2
for
123043559
tae-r.2
for
123085620
tae-r.2
for
123092406
hvu-r.1
for
123424618
hvu-r.1
for
123448871
sbi-r.1
for
8077519
bdi-r.1
for
100842930
bdi-r.1
for
100846138
bdi-r.1
for
104582765
cre-r.1
for
CHLRE_07g329700v5

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Ortholog ID: 3426
Species ath ath bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo mtr mtr sly sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi bdi bdi bdi cre
Symbol RPT2b RPT2a LOC103853882 LOC103834733 LOC106411074 LOC106358329 LOC106375503 LOC107913586 LOC107942549 LOC107925883 LOC102622673 LOC100814975 LOC100802442 LOC100798835 LOC100244194 LOC7459523 LOC7464418 LOC25484145 LOC11419485 LOC101267617 LOC102604637 LOC102577756 LOC107760308 LOC107779199 LOC107819147 LOC4332553 LOC4344373 LOC100193364 LOC100279843 LOC123085620 LOC123097733 LOC123051417 LOC123424618 LOC123448871 LOC8077519 LOC100842930 LOC100846138 LOC104582765 CHLRE_07g329700v5
Function* AAA-type ATPase family protein regulatory particle AAA-ATPase 2A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog B 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A-like 26S proteasome regulatory subunit 4 homolog B 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A probable 26S proteasome subunit rpt4 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A-like 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome subunit 4-like 26S proteasome regulatory subunit 4 homolog A-like 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog 26S protease regulatory subunit 4 homolog 26S protease regulatory subunit 4 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog 26S protease regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 15
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 10
bra04141 Protein processing in endoplasmic reticulum 3
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 17
bra04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 7
vvi00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 16
ppo04145 Phagosome 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 10
mtr04075 Plant hormone signal transduction 2
mtr04626 Plant-pathogen interaction 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03050 Proteasome 6
sot03013 Nucleocytoplasmic transport 5
sot03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 11
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta00051 Fructose and mannose metabolism 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 9
osa03013 Nucleocytoplasmic transport 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 13
osa00270 Cysteine and methionine metabolism 2
osa00450 Selenocompound metabolism 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 2
zma03015 mRNA surveillance pathway 2
zma04382 Cornified envelope formation 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 7
tae00561 Glycerolipid metabolism 3
tae00564 Glycerophospholipid metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 6
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 6
sbi03050 Proteasome 6
sbi04120 Ubiquitin mediated proteolysis 4
sbi03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 10
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 14
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 20
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816533 829025 103853882 103834733 106411074 106358329 106375503 107913586 107942549 107925883 102622673 100814975 100802442 100798835 100244194 7459523 7464418 25484145 11419485 101267617 102604637 102577756 107760308 107779199 107819147 4332553 4344373 100193364 100279843 123085620 123097733 123051417 123424618 123448871 8077519 100842930 100846138 104582765 5716193
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