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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7459523   26S proteasome regulatory subunit 4 homolog A 
 ppo-r.4   7459523   26S proteasome regulatory subunit 4 homolog A 
 ppo-u.5   7464418   26S proteasome regulatory subunit 4 homolog A 
 gma-u.5   100814975   probable 26S proteasome subunit rpt4 
 gma-u.5   100802442   26S proteasome regulatory subunit 4 homolog A 
 gma-u.5   100798835   26S proteasome regulatory subunit 4 homolog A 
 mtr-u.5   11419485   26S proteasome regulatory subunit 4 homolog A 
 mtr-u.5   25484145   26S proteasome regulatory subunit 4 homolog A 
 ath-u.5   RPT2b   AAA-type ATPase family protein 
 ath-u.5   RPT2a   regulatory particle AAA-ATPase 2A 
 vvi-u.5   100244194   26S proteasome regulatory subunit 4 homolog A-like 
 sly-u.5   101267617   26S proteasome regulatory subunit 4 homolog A 
 osa-u.5   4332553   26S proteasome regulatory subunit 4 homolog 
 osa-u.5   4344373   26S proteasome regulatory subunit 4 homolog 
 zma-u.5   100193364   26S protease regulatory subunit 4 homolog 
 zma-u.5   100279843   26S protease regulatory subunit 4 

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Top 50 coexpressed genes to 7459523 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7459523 (ppo-u.5 coexpression data)

CoexMap"7459523"


ppoLOC7459523 | Entrez gene ID : 7459523    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 3 2 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03050 [list] [network] Proteasome (82 genes)
GO BP
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (182 genes)  IEA  
GO CC
GO:0008540 [list] [network] proteasome regulatory particle, base subcomplex  (25 genes)  IEA  
GO MF
GO:0036402 [list] [network] proteasome-activating activity  (18 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (550 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_002301829.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 1,  chlo 1,  plas 1,  cysk_nucl 1  (predict for XP_002301829.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002301829.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7459523

.
ppo-r.4
for
7459523

.
ppo-u.5
for
7464418

.
gma-u.5
for
100814975

.
gma-u.5
for
100802442

.
gma-u.5
for
100798835

.
mtr-u.5
for
11419485

.
mtr-u.5
for
25484145

.
ath-u.5
for
RPT2b

.
ath-u.5
for
RPT2a

.
vvi-u.5
for
100244194

.
sly-u.5
for
101267617

.
osa-u.5
for
4332553

.
osa-u.5
for
4344373

.
zma-u.5
for
100193364

.
zma-u.5
for
100279843

.


Ortholog ID: 3426
Species ath ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot sot cit bdi bdi nta nta
Symbol RPT2a RPT2b LOC100798835 LOC100814975 LOC101267617 LOC4332553 LOC4344373 LOC100279843 LOC100193364 LOC103853882 LOC103834733 LOC100244194 LOC7459523 LOC7464418 LOC11419485 LOC25484145 LOC123085620 LOC123097733 LOC123448871 LOC123424618 LOC107913586 LOC107925883 LOC106358329 LOC106411074 CHLRE_07g329700v5 LOC8077519 LOC102577756 LOC102604637 LOC102622673 LOC100846138 LOC104582765 LOC107779199 LOC107819147
Function* regulatory particle AAA-ATPase 2A AAA-type ATPase family protein 26S proteasome regulatory subunit 4 homolog A probable 26S proteasome subunit rpt4 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog 26S protease regulatory subunit 4 26S protease regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A-like 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog B 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog B uncharacterized protein 26S protease regulatory subunit 4 homolog 26S proteasome subunit 4-like 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 4 homolog A 26S proteasome regulatory subunit 4 homolog A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 15
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 9
osa03013 Nucleocytoplasmic transport 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 13
osa00270 Cysteine and methionine metabolism 2
osa00450 Selenocompound metabolism 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 2
zma03015 mRNA surveillance pathway 2
zma04382 Cornified envelope formation 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 10
bra04141 Protein processing in endoplasmic reticulum 3
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 17
bra04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 7
vvi00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 16
ppo04145 Phagosome 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 10
mtr04075 Plant hormone signal transduction 2
mtr04626 Plant-pathogen interaction 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 6
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 6
sbi03050 Proteasome 6
sbi04120 Ubiquitin mediated proteolysis 4
sbi03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03050 Proteasome 6
sot03013 Nucleocytoplasmic transport 5
sot03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 14
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 11
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta00051 Fructose and mannose metabolism 2
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829025 816533 100798835 100814975 101267617 4332553 4344373 100279843 100193364 103853882 103834733 100244194 7459523 7464418 11419485 25484145 123085620 123097733 123448871 123424618 107913586 107925883 106358329 106411074 5716193 8077519 102577756 102604637 102622673 100846138 104582765 107779199 107819147
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