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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AGO4   Argonaute family protein 
 ath-u.5   AGO4   Argonaute family protein 
 ath-r.7   AGO4   Argonaute family protein 
 ath-e.2   AGO4   Argonaute family protein 
 ath-m.4.bio   AGO4   Argonaute family protein 
 ath-m.4.hor   AGO4   Argonaute family protein 
 ath-m.4.lig   AGO4   Argonaute family protein 
 ath-m.4.str   AGO4   Argonaute family protein 
 ath-m.4.tis   AGO4   Argonaute family protein 
 ath-u.5   AGO6   Argonaute family protein 
 ath-u.5   AGO9   Argonaute family protein 
 bra-r.6   103857461   protein argonaute 6 
 bra-r.6   103851403   protein argonaute 9 
 bra-r.6   103864747   protein argonaute 4 
 bna-r.1   106358449   protein argonaute 4 
 bna-r.1   106370426   protein argonaute 9-like 
 bna-r.1   106388008   protein argonaute 6 
 ghi-r.1   107954663   protein argonaute 16 
 ghi-r.1   107955633   protein argonaute 16 
 ghi-r.1   107906203   protein argonaute 4 
 cit-r.1   102610347   protein argonaute 16 
 cit-r.1   102615576   protein argonaute 4B-like 
 cit-r.1   102622330   protein argonaute 4-like 
 gma-u.5   100778875   protein argonaute 6 
 gma-u.5   100792105   protein argonaute 4 
 vvi-u.5   100243183   protein argonaute 16 
 vvi-u.5   100260151   protein argonaute 4A 
 ppo-u.5   7453743   protein argonaute 4A 
 ppo-u.5   7479625   protein argonaute 4A 
 mtr-u.5   11433384   protein argonaute 4 
 mtr-u.5   11433386   protein argonaute 4 
 sly-u.5   AGO4D   Argonaute 4D 
 sly-u.5   AGO4B   Argonaute 4B 
 sly-u.5   101246438   protein argonaute 4-like 
 sot-r.1   102589875   protein argonaute 4 
 sot-r.1   102583338   protein argonaute 16-like 
 nta-r.1   107770310   protein argonaute 4 
 nta-r.1   107784197   protein argonaute 4-like 
 osa-u.5   4335025   protein argonaute 4B-like 
 osa-u.5   4324438   protein argonaute 4A-like 
 osa-u.5   4342886   protein argonaute 16-like 
 zma-u.5   100382704   uncharacterized LOC100382704 
 zma-u.5   100217027   uncharacterized LOC100217027 
 tae-r.2   123150147   protein argonaute 4B 
 tae-r.2   123183434   protein argonaute 4B 
 tae-r.2   123071173   protein argonaute 4B 
 hvu-r.1   123452899   protein argonaute 4B-like 
 hvu-r.1   123443511   protein argonaute 4A 
 sbi-r.1   110433853   protein argonaute 4A-like 
 sbi-r.1   8061215   protein argonaute 16 
 bdi-r.1   100835941   protein argonaute 4B 
 bdi-r.1   100828729   protein argonaute 16 
 bdi-r.1   100845074   protein argonaute 4A 

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Top 50 coexpressed genes to AGO4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AGO4 (ath-m.9 coexpression data)

CoexMap"817246"


athAGO4 | Entrez gene ID : 817246      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 3 2 2 2 2 3 2 2 3 2 3 2 2 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010495 [list] [network] siRNA-mediated long-distance post-transcriptional gene silencing  (3 genes)  IMP  
GO:0030422 [list] [network] siRNA processing  (31 genes)  IGI IMP  
GO:0031048 [list] [network] regulatory ncRNA-mediated heterochromatin formation  (50 genes)  TAS  
GO:0051607 [list] [network] defense response to virus  (55 genes)  IDA  
GO:0031507 [list] [network] heterochromatin formation  (74 genes)  IMP  
GO:0042742 [list] [network] defense response to bacterium  (363 genes)  IMP  
GO CC
GO:0015030 [list] [network] Cajal body  (12 genes)  IDA  
GO:0000791 [list] [network] euchromatin  (13 genes)  IDA  
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  RCA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0035197 [list] [network] siRNA binding  (9 genes)  IDA  
GO:0004521 [list] [network] RNA endonuclease activity  (82 genes)  IMP  
GO:0003682 [list] [network] chromatin binding  (103 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001189613.1 [sequence] [blastp]
NP_565633.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 2  (predict for NP_001189613.1)
nucl 8,  cyto 2  (predict for NP_565633.1)
Subcellular
localization
TargetP
other 7,  chlo 5  (predict for NP_001189613.1)
other 7,  chlo 5  (predict for NP_565633.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AGO4
ath-u.5
for
AGO4
ath-r.7
for
AGO4
ath-e.2
for
AGO4
ath-m.4.bio
for
AGO4
ath-m.4.hor
for
AGO4
ath-m.4.lig
for
AGO4
ath-m.4.str
for
AGO4
ath-m.4.tis
for
AGO4
ath-u.5
for
AGO6
ath-u.5
for
AGO9
bra-r.6
for
103857461
bra-r.6
for
103851403
bra-r.6
for
103864747
bna-r.1
for
106358449
bna-r.1
for
106370426
bna-r.1
for
106388008
ghi-r.1
for
107954663
ghi-r.1
for
107955633
ghi-r.1
for
107906203
cit-r.1
for
102610347
cit-r.1
for
102615576
cit-r.1
for
102622330
gma-u.5
for
100778875
gma-u.5
for
100792105
vvi-u.5
for
100243183
vvi-u.5
for
100260151
ppo-u.5
for
7453743
ppo-u.5
for
7479625
mtr-u.5
for
11433384
mtr-u.5
for
11433386
sly-u.5
for
AGO4D
sly-u.5
for
AGO4B
sly-u.5
for
101246438
sot-r.1
for
102589875
sot-r.1
for
102583338
nta-r.1
for
107770310
nta-r.1
for
107784197
osa-u.5
for
4335025
osa-u.5
for
4324438
osa-u.5
for
4342886
zma-u.5
for
100382704
zma-u.5
for
100217027
tae-r.2
for
123150147
tae-r.2
for
123183434
tae-r.2
for
123071173
hvu-r.1
for
123452899
hvu-r.1
for
123443511
sbi-r.1
for
110433853
sbi-r.1
for
8061215
bdi-r.1
for
100835941
bdi-r.1
for
100828729
bdi-r.1
for
100845074


Ortholog ID: 1140
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot nta nta osa osa osa zma zma tae tae hvu hvu hvu sbi sbi bdi bdi bdi
Symbol AGO4 AGO6 LOC103857461 LOC103851403 LOC103829646 LOC106370426 LOC106388008 LOC106425688 LOC107906203 LOC107959046 LOC107943176 LOC102610347 LOC102615576 LOC102622330 LOC100778875 LOC100792105 LOC100820376 LOC100260151 LOC100241029 LOC7453743 LOC7479625 LOC18094926 LOC11433384 LOC11439465 AGO4D AGO4A LOC102583338 LOC107784197 LOC107830831 LOC4335025 LOC4324438 LOC4342886 LOC100217027 LOC100383316 LOC123150147 LOC123183434 LOC123452899 LOC123443511 LOC123395895 LOC8061215 LOC8066572 LOC100835941 LOC100828729 LOC100845074
Function* Argonaute family protein Argonaute family protein protein argonaute 6 protein argonaute 9 protein argonaute 4 protein argonaute 9-like protein argonaute 6 protein argonaute 9 protein argonaute 4 protein argonaute 4 protein argonaute 4 protein argonaute 16 protein argonaute 4B-like protein argonaute 4-like protein argonaute 6 protein argonaute 4 protein argonaute 4 protein argonaute 4A protein argonaute 4 protein argonaute 4A protein argonaute 4A protein argonaute 4 protein argonaute 4 protein argonaute 16 Argonaute 4D argonaute 4A protein argonaute 16-like protein argonaute 4-like protein argonaute 4-like protein argonaute 4B-like protein argonaute 4A-like protein argonaute 16-like uncharacterized LOC100217027 argonaute104 protein argonaute 4B protein argonaute 4B protein argonaute 4B-like protein argonaute 4A protein argonaute 16-like protein argonaute 16 protein argonaute 4B protein argonaute 4B protein argonaute 16 protein argonaute 4A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
ath03460 Fanconi anemia pathway 2
ath03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 9
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03460 Fanconi anemia pathway 3
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
ghi00220 Arginine biosynthesis 2
ghi00230 Purine metabolism 2
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 2
cit03410 Base excision repair 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 5
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 3
mtr03020 RNA polymerase 2
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
mtr03440 Homologous recombination 2
mtr03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00052 Galactose metabolism 2
sly00500 Starch and sucrose metabolism 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03082 ATP-dependent chromatin remodeling 2
osa03040 Spliceosome 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 3
osa03082 ATP-dependent chromatin remodeling 2
osa03015 mRNA surveillance pathway 2
osa03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 5
hvu03030 DNA replication 2
hvu03410 Base excision repair 2
hvu03420 Nucleotide excision repair 2
hvu03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
sbi03430 Mismatch repair 2
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 2
bdi00061 Fatty acid biosynthesis 2
bdi00062 Fatty acid elongation 2
bdi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03015 mRNA surveillance pathway 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817246 817856 103857461 103851403 103829646 106370426 106388008 106425688 107906203 107959046 107943176 102610347 102615576 102622330 100778875 100792105 100820376 100260151 100241029 7453743 7479625 18094926 11433384 11439465 101248049 101256023 102583338 107784197 107830831 4335025 4324438 4342886 100217027 100383316 123150147 123183434 123452899 123443511 123395895 8061215 8066572 100835941 100828729 100845074
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