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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   CSLD1   cellulose synthase-like D1 
 ath-u.5   CSLD1   cellulose synthase-like D1 
 ath-r.7   CSLD1   cellulose synthase-like D1 
 ath-e.2   CSLD1   cellulose synthase-like D1 
 ath-m.4.bio   CSLD1   cellulose synthase-like D1 
 ath-m.4.hor   CSLD1   cellulose synthase-like D1 
 ath-m.4.lig   CSLD1   cellulose synthase-like D1 
 ath-m.4.str   CSLD1   cellulose synthase-like D1 
 ath-m.4.tis   CSLD1   cellulose synthase-like D1 
 ath-u.5   CSLD3   cellulose synthase-like D3 
 ath-u.5   CSLD4   cellulose synthase like D4 
 ath-u.5   CSLD2   cellulose-synthase like D2 
 bra-r.6   103843995   cellulose synthase-like protein D3 
 bna-r.1   125609171   cellulose synthase-like protein D3 
 bna-r.1   125575663   cellulose synthase-like protein D2 
 bna-r.1   125585839   cellulose synthase-like protein D1 
 ghi-r.1   107909056   cellulose synthase-like protein D3 
 ghi-r.1   107940246   cellulose synthase-like protein D3 
 ghi-r.1   107925659   cellulose synthase-like protein D5 
 cit-r.1   102615911   cellulose synthase-like protein D3 
 gma-u.5   100813901   cellulose synthase-like protein D3 
 gma-u.5   100813900   cellulose synthase-like protein D2 
 gma-u.5   100807607   cellulose synthase-like protein D4 
 vvi-u.5   100267420   cellulose synthase-like protein D4 
 vvi-u.5   100261385   cellulose synthase-like protein D3 
 vvi-u.5   100247219   cellulose synthase-like protein D2 
 ppo-u.5   18104196   cellulose synthase-like protein D3 
 ppo-u.5   18094117   cellulose synthase-like protein D3 
 mtr-u.5   25482857   cellulose synthase-like protein D4 
 mtr-u.5   11421507   cellulose synthase-like protein D5 
 sly-u.5   101261522   cellulose synthase-like protein D1 
 sly-u.5   101254142   cellulose synthase-like protein D4 
 sly-u.5   101249747   cellulose synthase-like protein D3 
 sot-r.1   102588915   cellulose synthase-like protein D3 
 nta-r.1   107763004   cellulose synthase-like protein D3 
 nta-r.1   107771119   cellulose synthase-like protein D5 
 nta-r.1   107781415   cellulose synthase-like protein D5 
 osa-u.5   4339895   cellulose synthase-like protein D2 
 zma-u.5   103637736   cellulose synthase-like protein D1 
 zma-u.5   100383550   uncharacterized LOC100383550 
 zma-u.5   100216739   Putative cellulose synthase-like family protein 
 tae-r.2   123110776   cellulose synthase-like protein D4 
 tae-r.2   123088406   cellulose synthase-like protein D2 
 tae-r.2   123051683   cellulose synthase-like protein D3 
 hvu-r.1   123413070   cellulose synthase-like protein D2 
 sbi-r.1   8068819   cellulose synthase-like protein D4 
 sbi-r.1   8067986   cellulose synthase-like protein D3 
 bdi-r.1   100834644   cellulose synthase-like protein D2 
 bdi-r.1   100827081   cellulose synthase-like protein D1 

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Top 50 coexpressed genes to CSLD1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CSLD1 (ath-m.9 coexpression data)

CoexMap"817872"


athCSLD1 | Entrez gene ID : 817872      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 1 3 3 1 3 3 2 2 3 1 3 1 3 3 1 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009846 [list] [network] pollen germination  (77 genes)  IMP  
GO CC
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  ISM  
GO MF
GO:0016760 [list] [network] cellulose synthase (UDP-forming) activity  (9 genes)  IEA  
GO:0016759 [list] [network] cellulose synthase activity  (38 genes)  ISS  
GO:0016757 [list] [network] glycosyltransferase activity  (554 genes)  ISS  
Protein NP_001324935.1 [sequence] [blastp]
NP_180869.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 7,  E.R. 1,  chlo 1,  mito 1,  chlo_mito 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for NP_001324935.1)
plas 7,  E.R. 1,  chlo 1,  mito 1,  chlo_mito 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for NP_180869.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001324935.1)
chlo 7  (predict for NP_180869.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
CSLD1
ath-u.5
for
CSLD1
ath-r.7
for
CSLD1
ath-e.2
for
CSLD1
ath-m.4.bio
for
CSLD1
ath-m.4.hor
for
CSLD1
ath-m.4.lig
for
CSLD1
ath-m.4.str
for
CSLD1
ath-m.4.tis
for
CSLD1
ath-u.5
for
CSLD3
ath-u.5
for
CSLD4
ath-u.5
for
CSLD2
bra-r.6
for
103843995
bna-r.1
for
125609171
bna-r.1
for
125575663
bna-r.1
for
125585839
ghi-r.1
for
107909056
ghi-r.1
for
107940246
ghi-r.1
for
107925659
cit-r.1
for
102615911
gma-u.5
for
100813901
gma-u.5
for
100813900
gma-u.5
for
100807607
vvi-u.5
for
100267420
vvi-u.5
for
100261385
vvi-u.5
for
100247219
ppo-u.5
for
18104196
ppo-u.5
for
18094117
mtr-u.5
for
25482857
mtr-u.5
for
11421507
sly-u.5
for
101261522
sly-u.5
for
101254142
sly-u.5
for
101249747
sot-r.1
for
102588915
nta-r.1
for
107763004
nta-r.1
for
107771119
nta-r.1
for
107781415
osa-u.5
for
4339895
zma-u.5
for
103637736
zma-u.5
for
100383550
zma-u.5
for
100216739
tae-r.2
for
123110776
tae-r.2
for
123088406
tae-r.2
for
123051683
hvu-r.1
for
123413070
sbi-r.1
for
8068819
sbi-r.1
for
8067986
bdi-r.1
for
100834644
bdi-r.1
for
100827081


Ortholog ID: 440
Species ath ath ath bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi vvi vvi ppo mtr mtr mtr sly sly sly sot sot nta nta nta osa osa zma zma zma tae hvu sbi sbi bdi bdi
Symbol CSLD4 CSLD2 CSLD5 LOC103855125 LOC103851073 LOC106423094 LOC106401091 LOC106354438 LOC107898894 LOC107946051 LOC107948896 LOC102625040 LOC100785722 LOC100785985 LOC100792604 LOC100267420 LOC100261385 LOC100243459 LOC18094117 LOC11421507 LOC11441666 LOC11424821 LOC101247596 LOC101243911 LOC101262856 LOC102583679 LOC102583574 LOC107800066 LOC107821064 LOC107821582 LOC4349505 LOC107276048 LOC100383550 LOC100216739 LOC103638409 LOC123088406 LOC123413070 LOC8066890 LOC8055128 LOC100834644 LOC100845417
Function* cellulose synthase like D4 cellulose-synthase like D2 cellulose synthase-like D5 cellulose synthase-like protein D3 cellulose synthase-like protein D2 cellulose synthase-like protein D5 cellulose synthase-like protein D1 cellulose synthase-like protein D2 cellulose synthase-like protein D4 cellulose synthase-like protein D5 cellulose synthase cellulose synthase-like protein D3 cellulose synthase-like protein D1 cellulose synthase-like protein D3 cellulose synthase-like protein D2 cellulose synthase-like protein D4 cellulose synthase-like protein D3 cellulose synthase-like protein D5 cellulose synthase-like protein D3 cellulose synthase-like protein D5 cellulose synthase-like protein D3 cellulose synthase-like protein D2 cellulose synthase-like protein D3 cellulose synthase-like protein D3 cellulose synthase-like protein D5 cellulose synthase-like protein D2 cellulose synthase-like protein D5 cellulose synthase-like protein D1 cellulose synthase-like protein D3 cellulose synthase-like protein D1 cellulose synthase-like protein D1 cellulose synthase-like protein D4 uncharacterized LOC100383550 Putative cellulose synthase-like family protein cellulose synthase-like protein D5 cellulose synthase-like protein D2 cellulose synthase-like protein D2 cellulose synthase-like protein D2 cellulose synthase-like protein D1 cellulose synthase-like protein D2 cellulose synthase-like protein D4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 3
ghi04016 MAPK signaling pathway - plant 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00480 Glutathione metabolism 4
vvi04120 Ubiquitin mediated proteolysis 3
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01250 Biosynthesis of nucleotide sugars 6
vvi00520 Amino sugar and nucleotide sugar metabolism 4
vvi00053 Ascorbate and aldarate metabolism 3
vvi01240 Biosynthesis of cofactors 3
vvi00541 Biosynthesis of various nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 2
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 2
mtr04075 Plant hormone signal transduction 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 2
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00541 Biosynthesis of various nucleotide sugars 3
zma01250 Biosynthesis of nucleotide sugars 3
zma00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
bdi04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829975 831554 839467 103855125 103851073 106423094 106401091 106354438 107898894 107946051 107948896 102625040 100785722 100785985 100792604 100267420 100261385 100243459 18094117 11421507 11441666 11424821 101247596 101243911 101262856 102583679 102583574 107800066 107821064 107821582 4349505 107276048 100383550 100216739 103638409 123088406 123413070 8066890 8055128 100834644 100845417
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