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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SWC2   DNA binding protein SWC2 
 ath-u.5   SWC2   DNA binding protein SWC2 
 ath-r.7   SWC2   DNA binding protein SWC2 
 ath-e.2   SWC2   DNA binding protein SWC2 
 ath-m.4.bio   SWC2   DNA binding protein SWC2 
 ath-m.4.hor   SWC2   DNA binding protein SWC2 
 ath-m.4.lig   SWC2   DNA binding protein SWC2 
 ath-m.4.str   SWC2   DNA binding protein SWC2 
 ath-m.4.tis   SWC2   DNA binding protein SWC2 
 bra-r.6   103867259   SWR1 complex subunit 2 
 bna-r.1   125598296   SWR1 complex subunit 2-like 
 bna-r.1   106451097   SWR1 complex subunit 2 
 bna-r.1   106375822   SWR1 complex subunit 2 
 ghi-r.1   107961952   SWR1 complex subunit 2 
 ghi-r.1   107943686   SWR1 complex subunit 2 
 ghi-r.1   107913436   SWR1 complex subunit 2 
 cit-r.1   102628304   SWR1 complex subunit 2 
 gma-u.5   100811669   SWR1 complex subunit 2 
 vvi-u.5   100258083   SWR1 complex subunit 2 
 ppo-u.5   18095693   SWR1 complex subunit 2 
 mtr-u.5   120577620   SWR1 complex subunit 2 
 sly-u.5   101250882   SWR1 complex subunit 2 
 sot-r.1   102593669   SWR1 complex subunit 2 
 nta-r.1   107782137   SWR1 complex subunit 2 
 nta-r.1   107808723   SWR1 complex subunit 2 
 osa-u.5   4344862   SWR1 complex subunit 2 
 zma-u.5   100191262   uncharacterized LOC100191262 
 tae-r.2   123147682   SWR1 complex subunit 2 
 tae-r.2   100037603   SWR1 complex subunit 2 
 tae-r.2   123167749   SWR1 complex subunit 2 
 hvu-r.1   123407285   SWR1 complex subunit 2 
 sbi-r.1   8064331   SWR1 complex subunit 2 
 bdi-r.1   100836776   casparian strip membrane protein 2 
 bdi-r.1   100822766   SWR1 complex subunit 2 
 cre-r.1   CHLRE_17g728200v5   uncharacterized protein 

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Top 50 coexpressed genes to SWC2 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SWC2 (ath-m.9 coexpression data)

CoexMap"818246"


athSWC2 | Entrez gene ID : 818246      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 3 1 1 1 1 1 1 1 2 1 1 3 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
GO BP
GO:0045815 [list] [network] transcription initiation-coupled chromatin remodeling  (6 genes)  IEA  
GO CC
GO:0000812 [list] [network] Swr1 complex  (13 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0140849 [list] [network] ATP-dependent H2AZ histone chaperone activity  (1 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001324358.1 [sequence] [blastp]
NP_181212.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  mito 3,  cyto 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001324358.1)
nucl 8,  cyto 1,  mito 1,  plas 1,  mito_plas 1,  cyto_plas 1  (predict for NP_181212.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001324358.1)
other 9  (predict for NP_181212.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SWC2
ath-u.5
for
SWC2
ath-r.7
for
SWC2
ath-e.2
for
SWC2
ath-m.4.bio
for
SWC2
ath-m.4.hor
for
SWC2
ath-m.4.lig
for
SWC2
ath-m.4.str
for
SWC2
ath-m.4.tis
for
SWC2
bra-r.6
for
103867259
bna-r.1
for
125598296
bna-r.1
for
106451097
bna-r.1
for
106375822
ghi-r.1
for
107961952
ghi-r.1
for
107943686
ghi-r.1
for
107913436
cit-r.1
for
102628304
gma-u.5
for
100811669
vvi-u.5
for
100258083
ppo-u.5
for
18095693
mtr-u.5
for
120577620
sly-u.5
for
101250882
sot-r.1
for
102593669
nta-r.1
for
107782137
nta-r.1
for
107808723
osa-u.5
for
4344862
zma-u.5
for
100191262
tae-r.2
for
123147682
tae-r.2
for
100037603
tae-r.2
for
123167749
hvu-r.1
for
123407285
sbi-r.1
for
8064331
bdi-r.1
for
100836776
bdi-r.1
for
100822766
cre-r.1
for
CHLRE_17g728200v5


Ortholog ID: 7948
Species ath bra bna bna bna ghi ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi bdi cre
Symbol SWC2 LOC103867259 LOC125598296 LOC106451097 LOC106375822 LOC107961952 LOC107943686 LOC107899756 LOC102628304 LOC100811669 LOC100258083 LOC18095693 LOC120577620 LOC101250882 LOC102593669 LOC107782137 LOC107808723 LOC4344862 LOC100191262 LOC123147682 LOC100037603 LOC123167749 LOC123407285 LOC8064331 LOC100836776 LOC100822766 CHLRE_17g728200v5
Function* DNA binding protein SWC2 SWR1 complex subunit 2 SWR1 complex subunit 2-like SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 uncharacterized LOC107899756 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 uncharacterized LOC100191262 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 casparian strip membrane protein 2 SWR1 complex subunit 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04122 Sulfur relay system 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae04136 Autophagy - other 3
tae04382 Cornified envelope formation 3
tae03082 ATP-dependent chromatin remodeling 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae04120 Ubiquitin mediated proteolysis 3
tae04130 SNARE interactions in vesicular transport 3
tae04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03015 mRNA surveillance pathway 2
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818246 103867259 125598296 106451097 106375822 107961952 107943686 107899756 102628304 100811669 100258083 18095693 120577620 101250882 102593669 107782137 107808723 4344862 100191262 123147682 100037603 123167749 123407285 8064331 100836776 100822766 5722819
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