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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT3G09540   Pectin lyase-like superfamily protein 
 ath-u.5   AT3G09540   Pectin lyase-like superfamily protein 
 ath-r.7   AT3G09540   Pectin lyase-like superfamily protein 
 ath-e.2   AT3G09540   Pectin lyase-like superfamily protein 
 ath-m.4.bio   AT3G09540   Pectin lyase-like superfamily protein 
 ath-m.4.hor   AT3G09540   Pectin lyase-like superfamily protein 
 ath-m.4.lig   AT3G09540   Pectin lyase-like superfamily protein 
 ath-m.4.str   AT3G09540   Pectin lyase-like superfamily protein 
 ath-m.4.tis   AT3G09540   Pectin lyase-like superfamily protein 
 ath-u.5   AT3G55140   Pectin lyase-like superfamily protein 
 bra-r.6   103870538   putative pectate lyase 21 
 bna-r.1   106452749   putative pectate lyase 21 
 bna-r.1   106445342   probable pectate lyase 4 
 bna-r.1   106382022   probable pectate lyase 4 
 ghi-r.1   107891022   probable pectate lyase 4 
 ghi-r.1   107930738   probable pectate lyase 4 
 ghi-r.1   107897768   probable pectate lyase 4 
 cit-r.1   102614939   probable pectate lyase 4 
 cit-r.1   102617115   probable pectate lyase 4 
 gma-u.5   100799009   probable pectate lyase 4 
 gma-u.5   100814368   probable pectate lyase 4 
 gma-u.5   100802068   probable pectate lyase 4 
 vvi-u.5   100255011   probable pectate lyase 4 
 vvi-u.5   100246761   probable pectate lyase 4 
 ppo-u.5   7469793   probable pectate lyase 4 
 ppo-u.5   7467584   probable pectate lyase 4 
 ppo-u.5   7491952   probable pectate lyase 4 
 mtr-u.5   25485739   putative pectate lyase 21 
 mtr-u.5   25484083   probable pectate lyase 4 
 sly-u.5   101244802   polysaccharide lyase family 6 protein 
 sly-u.5   101267397   probable pectate lyase 4 
 sot-r.1   102579376   probable pectate lyase 4 
 sot-r.1   102593229   probable pectate lyase 4 
 nta-r.1   107820665   putative pectate lyase 4 
 nta-r.1   107780493   putative pectate lyase 4 
 nta-r.1   107787860   putative pectate lyase 4 
 osa-u.5   4326883   putative pectate lyase 21 
 zma-u.5   100283618   uncharacterized LOC100283618 
 zma-u.5   109939990   probable pectate lyase 4 
 tae-r.2   123051348   probable pectate lyase 4 
 tae-r.2   123043487   probable pectate lyase 4 
 hvu-r.1   123424575   pectate lyase 1 
 sbi-r.1   8076305   probable pectate lyase 4 
 bdi-r.1   100841005   probable pectate lyase 4 

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Top 50 coexpressed genes to AT3G09540 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G09540 (ath-m.9 coexpression data)

CoexMap"820111"


athAT3G09540 | Entrez gene ID : 820111      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 1 3 3 2 3 2 3 2 2 2 3 1 2 2 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
GO BP
GO CC
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM  
GO MF
GO:0016829 [list] [network] lyase activity  (272 genes)  ISS  
Protein NP_001326949.1 [sequence] [blastp]
NP_001326950.1 [sequence] [blastp]
NP_187565.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 2,  chlo 1,  extr 1,  pero 1,  cysk 1  (predict for NP_001326949.1)
pero 4,  cyto 2,  mito 1,  cyto_nucl 1,  chlo 1,  nucl 1,  extr 1,  cysk 1,  cyto_mito 1,  cysk_nucl 1,  mito_plas 1  (predict for NP_001326950.1)
pero 4,  mito 2,  cyto 1,  chlo_mito 1,  chlo 1,  nucl 1,  extr 1,  cysk 1,  cysk_nucl 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_187565.1)
Subcellular
localization
TargetP
chlo 4,  other 4  (predict for NP_001326949.1)
chlo 4,  other 4  (predict for NP_001326950.1)
chlo 4,  other 4  (predict for NP_187565.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT3G09540
ath-u.5
for
AT3G09540
ath-r.7
for
AT3G09540
ath-e.2
for
AT3G09540
ath-m.4.bio
for
AT3G09540
ath-m.4.hor
for
AT3G09540
ath-m.4.lig
for
AT3G09540
ath-m.4.str
for
AT3G09540
ath-m.4.tis
for
AT3G09540
ath-u.5
for
AT3G55140
bra-r.6
for
103870538
bna-r.1
for
106452749
bna-r.1
for
106445342
bna-r.1
for
106382022
ghi-r.1
for
107891022
ghi-r.1
for
107930738
ghi-r.1
for
107897768
cit-r.1
for
102614939
cit-r.1
for
102617115
gma-u.5
for
100799009
gma-u.5
for
100814368
gma-u.5
for
100802068
vvi-u.5
for
100255011
vvi-u.5
for
100246761
ppo-u.5
for
7469793
ppo-u.5
for
7467584
ppo-u.5
for
7491952
mtr-u.5
for
25485739
mtr-u.5
for
25484083
sly-u.5
for
101244802
sly-u.5
for
101267397
sot-r.1
for
102579376
sot-r.1
for
102593229
nta-r.1
for
107820665
nta-r.1
for
107780493
nta-r.1
for
107787860
osa-u.5
for
4326883
zma-u.5
for
100283618
zma-u.5
for
109939990
tae-r.2
for
123051348
tae-r.2
for
123043487
hvu-r.1
for
123424575
sbi-r.1
for
8076305
bdi-r.1
for
100841005


Ortholog ID: 3683
Species ath ath bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma zma tae hvu sbi bdi
Symbol AT3G09540 AT3G55140 LOC103870538 LOC106452749 LOC106445342 LOC111197831 LOC107891022 LOC107930738 LOC107889720 LOC102614939 LOC102617115 LOC100799009 LOC100814368 LOC100802068 LOC100255011 LOC100246761 LOC7469793 LOC7467584 LOC7491952 LOC25485739 LOC25484083 LOC101244802 LOC101267397 LOC102579376 LOC102593229 LOC107820665 LOC107780493 LOC107787860 LOC4326883 LOC100283618 LOC109939990 LOC123051348 LOC123424575 LOC8076305 LOC100841005
Function* Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein putative pectate lyase 21 putative pectate lyase 21 probable pectate lyase 4 putative pectate lyase 21 probable pectate lyase 4 probable pectate lyase 4 probable pectate lyase 4 probable pectate lyase 4 probable pectate lyase 4 probable pectate lyase 4 probable pectate lyase 4 probable pectate lyase 4 probable pectate lyase 4 probable pectate lyase 4 probable pectate lyase 4 probable pectate lyase 4 probable pectate lyase 4 putative pectate lyase 21 probable pectate lyase 4 polysaccharide lyase family 6 protein probable pectate lyase 4 probable pectate lyase 4 probable pectate lyase 4 putative pectate lyase 4 putative pectate lyase 4 putative pectate lyase 4 putative pectate lyase 21 uncharacterized LOC100283618 probable pectate lyase 4 probable pectate lyase 4 pectate lyase 1 probable pectate lyase 4 probable pectate lyase 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00600 Sphingolipid metabolism 4
bna00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00220 Arginine biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi00061 Fatty acid biosynthesis 2
ghi00062 Fatty acid elongation 2
ghi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi00040 Pentose and glucuronate interconversions 2
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00220 Arginine biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi00061 Fatty acid biosynthesis 2
ghi00062 Fatty acid elongation 2
ghi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit03083 Polycomb repressive complex 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit00564 Glycerophospholipid metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00040 Pentose and glucuronate interconversions 2
gma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00051 Fructose and mannose metabolism 2
gma00500 Starch and sucrose metabolism 2
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 3
ppo00020 Citrate cycle (TCA cycle) 2
ppo00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 6
mtr03060 Protein export 5
mtr03022 Basal transcription factors 4
mtr00510 N-Glycan biosynthesis 2
mtr00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 2
mtr04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot04070 Phosphatidylinositol signaling system 2
sot04075 Plant hormone signal transduction 2
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00520 Amino sugar and nucleotide sugar metabolism 4
sot00053 Ascorbate and aldarate metabolism 3
sot01240 Biosynthesis of cofactors 3
sot01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00460 Cyanoamino acid metabolism 2
bdi00500 Starch and sucrose metabolism 2
bdi00999 Biosynthesis of various plant secondary metabolites 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820111 824680 103870538 106452749 106445342 111197831 107891022 107930738 107889720 102614939 102617115 100799009 100814368 100802068 100255011 100246761 7469793 7467584 7491952 25485739 25484083 101244802 101267397 102579376 102593229 107820665 107780493 107787860 4326883 100283618 109939990 123051348 123424575 8076305 100841005
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