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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   TRFL9   TRF-like 9 
 ath-u.5   TRFL9   TRF-like 9 
 ath-r.7   TRFL9   TRF-like 9 
 ath-e.2   TRFL9   TRF-like 9 
 ath-m.4.bio   TRFL9   TRF-like 9 
 ath-m.4.hor   TRFL9   TRF-like 9 
 ath-m.4.lig   TRFL9   TRF-like 9 
 ath-m.4.str   TRFL9   TRF-like 9 
 ath-m.4.tis   TRFL9   TRF-like 9 
 ath-u.5   TRFL1   TRF-like 1 
 ath-u.5   TBP1   telomeric DNA binding protein 1 
 bra-r.6   103850900   telomere repeat-binding protein 4 
 bra-r.6   103845457   telomere repeat-binding protein 3 
 bra-r.6   103843940   telomere repeat-binding protein 5 
 bna-r.1   111204284   telomere repeat-binding protein 4 
 ghi-r.1   107918056   telomere repeat-binding protein 3 
 ghi-r.1   107906563   telomere repeat-binding protein 5 
 ghi-r.1   107900464   telomere repeat-binding protein 4 
 cit-r.1   102622190   telomere repeat-binding protein 4 
 cit-r.1   102622616   telomere repeat-binding protein 5 
 gma-u.5   100792533   telomere repeat-binding protein 1 
 gma-u.5   100816121   telomere repeat-binding protein 2 
 gma-u.5   100814318   telomere repeat-binding protein 3 
 vvi-u.5   100259786   telomere repeat-binding protein 4 
 vvi-u.5   100257090   telomere repeat-binding protein 5 
 vvi-u.5   100247654   telomere repeat-binding protein 5 
 ppo-u.5   7458136   telomere repeat-binding protein 3 
 ppo-u.5   7465106   telomere repeat-binding protein 2 
 ppo-u.5   7467553   telomere repeat-binding protein 3 
 mtr-u.5   11417600   telomere repeat-binding protein 5 
 mtr-u.5   11436475   telomere repeat-binding protein 4 
 mtr-u.5   25489316   telomere repeat-binding protein 2 
 sly-u.5   101255102   telomere repeat-binding protein 5-like 
 sly-u.5   101255981   telomere repeat-binding protein 3 
 sly-u.5   101246932   telomere repeat-binding protein 5 
 sot-r.1   102578199   telomere repeat-binding protein 4-like 
 sot-r.1   102584447   telomere repeat-binding protein 5-like 
 sot-r.1   102584827   telomere repeat-binding protein 3 
 nta-r.1   107818585   telomere repeat-binding protein 4 
 nta-r.1   107808579   telomere repeat-binding protein 4 
 nta-r.1   107798979   telomere repeat-binding protein 5 
 osa-u.5   4332403   telomere repeat-binding protein 5 
 zma-u.5   542534   initiator-binding protein 2 
 zma-u.5   542426   initiator binding protein 
 zma-u.5   111589230   uncharacterized LOC111589230 
 tae-r.2   123063689   telomere-binding protein 1 
 tae-r.2   123072839   telomere-binding protein 1 
 tae-r.2   123080999   telomere-binding protein 1 
 hvu-r.1   123445700   telomere-binding protein 1-like 
 hvu-r.1   123449022   telomere repeat-binding protein 5-like 
 sbi-r.1   8081507   telomere repeat-binding protein 5 
 sbi-r.1   8073576   telomere-binding protein 1 
 bdi-r.1   100830660   telomere repeat-binding protein 5 
 bdi-r.1   100834090   telomere-binding protein 1 

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Top 50 coexpressed genes to TRFL9 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TRFL9 (ath-m.9 coexpression data)

CoexMap"820436"


athTRFL9 | Entrez gene ID : 820436      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 1 3 2 3 3 3 3 3 3 3 1 3 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0008301 [list] [network] DNA binding, bending  (2 genes)  IDA  
GO:0042162 [list] [network] telomeric DNA binding  (14 genes)  IDA  
Protein NP_001327482.1 [sequence] [blastp]
NP_187862.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  mito 1,  plas 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for NP_001327482.1)
nucl 6,  chlo 1,  mito 1,  plas 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for NP_187862.1)
Subcellular
localization
TargetP
other 3  (predict for NP_001327482.1)
other 3  (predict for NP_187862.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
TRFL9
ath-u.5
for
TRFL9
ath-r.7
for
TRFL9
ath-e.2
for
TRFL9
ath-m.4.bio
for
TRFL9
ath-m.4.hor
for
TRFL9
ath-m.4.lig
for
TRFL9
ath-m.4.str
for
TRFL9
ath-m.4.tis
for
TRFL9
ath-u.5
for
TRFL1
ath-u.5
for
TBP1
bra-r.6
for
103850900
bra-r.6
for
103845457
bra-r.6
for
103843940
bna-r.1
for
111204284
ghi-r.1
for
107918056
ghi-r.1
for
107906563
ghi-r.1
for
107900464
cit-r.1
for
102622190
cit-r.1
for
102622616
gma-u.5
for
100792533
gma-u.5
for
100816121
gma-u.5
for
100814318
vvi-u.5
for
100259786
vvi-u.5
for
100257090
vvi-u.5
for
100247654
ppo-u.5
for
7458136
ppo-u.5
for
7465106
ppo-u.5
for
7467553
mtr-u.5
for
11417600
mtr-u.5
for
11436475
mtr-u.5
for
25489316
sly-u.5
for
101255102
sly-u.5
for
101255981
sly-u.5
for
101246932
sot-r.1
for
102578199
sot-r.1
for
102584447
sot-r.1
for
102584827
nta-r.1
for
107818585
nta-r.1
for
107808579
nta-r.1
for
107798979
osa-u.5
for
4332403
zma-u.5
for
542534
zma-u.5
for
542426
zma-u.5
for
111589230
tae-r.2
for
123063689
tae-r.2
for
123072839
tae-r.2
for
123080999
hvu-r.1
for
123445700
hvu-r.1
for
123449022
sbi-r.1
for
8081507
sbi-r.1
for
8073576
bdi-r.1
for
100830660
bdi-r.1
for
100834090


Ortholog ID: 1079
Species ath ath bra bra ghi ghi ghi cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol TRFL9 TRFL1 LOC103845457 LOC103870245 LOC107906563 LOC107900464 LOC107950148 LOC102622190 LOC102622616 LOC100780881 LOC100795471 LOC100801280 LOC100259786 LOC100257090 LOC100247654 LOC7458136 LOC7467553 LOC7487260 LOC11417600 LOC25489316 LOC25498486 LOC101255102 LOC101255981 TBP1 LOC102578199 LOC102584447 LOC102598179 LOC107804961 LOC107809816 LOC107816727 LOC4332403 LOC542534 LOC542426 LOC111589230 LOC123072839 LOC123080999 LOC123097910 LOC123445700 LOC123449022 LOC8081507 LOC8073576 LOC100830660 LOC100834090
Function* TRF-like 9 TRF-like 1 telomere repeat-binding protein 3 telomere repeat-binding protein 3 telomere repeat-binding protein 5 telomere repeat-binding protein 4 telomere repeat-binding protein 5 telomere repeat-binding protein 4 telomere repeat-binding protein 5 telomere repeat-binding protein 2 telomere repeat-binding protein 3 telomere repeat-binding protein 5 telomere repeat-binding protein 4 telomere repeat-binding protein 5 telomere repeat-binding protein 5 telomere repeat-binding protein 3 telomere repeat-binding protein 3 telomere repeat-binding protein 5 telomere repeat-binding protein 5 telomere repeat-binding protein 2 telomere repeat-binding protein 5 telomere repeat-binding protein 5-like telomere repeat-binding protein 3 telomere binding protein telomere repeat-binding protein 4-like telomere repeat-binding protein 5-like telomere repeat-binding protein 5-like telomere repeat-binding protein 4 telomere repeat-binding protein 5-like telomere repeat-binding protein 4 telomere repeat-binding protein 5 initiator-binding protein 2 initiator binding protein uncharacterized LOC111589230 telomere-binding protein 1 telomere-binding protein 1 telomere repeat-binding protein 5 telomere-binding protein 1-like telomere repeat-binding protein 5-like telomere repeat-binding protein 5 telomere-binding protein 1 telomere repeat-binding protein 5 telomere-binding protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
ath04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 5
ghi04141 Protein processing in endoplasmic reticulum 3
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00230 Purine metabolism 2
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
vvi04136 Autophagy - other 2
vvi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 3
sly00520 Amino sugar and nucleotide sugar metabolism 2
sly01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 3
sot00100 Steroid biosynthesis 2
sot00561 Glycerolipid metabolism 2
sot00564 Glycerophospholipid metabolism 2
sot00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
osa01240 Biosynthesis of cofactors 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 3
zma03015 mRNA surveillance pathway 2
zma00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 3
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820436 823812 103845457 103870245 107906563 107900464 107950148 102622190 102622616 100780881 100795471 100801280 100259786 100257090 100247654 7458136 7467553 7487260 11417600 25489316 25498486 101255102 101255981 100147728 102578199 102584447 102598179 107804961 107809816 107816727 4332403 542534 542426 111589230 123072839 123080999 123097910 123445700 123449022 8081507 8073576 100830660 100834090
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