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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PME3   pectin methylesterase 3 
 ath-u.5   PME3   pectin methylesterase 3 
 ath-r.7   PME3   pectin methylesterase 3 
 ath-e.2   PME3   pectin methylesterase 3 
 ath-m.4.bio   PME3   pectin methylesterase 3 
 ath-m.4.hor   PME3   pectin methylesterase 3 
 ath-m.4.lig   PME3   pectin methylesterase 3 
 ath-m.4.str   PME3   pectin methylesterase 3 
 ath-m.4.tis   PME3   pectin methylesterase 3 
 ath-u.5   PME2   pectin methylesterase 2 
 bra-r.6   103842134   pectinesterase/pectinesterase inhibitor 3 
 bra-r.6   103842123   pectinesterase/pectinesterase inhibitor 3 
 bra-r.6   103848519   pectinesterase 2 
 bna-r.1   125597397   pectinesterase 2-like 
 bna-r.1   106439508   pectinesterase/pectinesterase inhibitor 3 
 bna-r.1   106439361   pectinesterase/pectinesterase inhibitor 3-like 
 ghi-r.1   107907065   pectinesterase-like 
 ghi-r.1   107896119   pectinesterase 
 ghi-r.1   107902709   pectinesterase-like 
 cit-r.1   PECS-1.1   pectinesterase 
 cit-r.1   PME4   putative thermostable pectinesterase 
 gma-u.5   100777646   pectinesterase/pectinesterase inhibitor 
 gma-u.5   100776623   pectinesterase 
 vvi-u.5   104880619   pectinesterase 
 vvi-u.5   100251413   pectinesterase 
 ppo-u.5   7476660   pectinesterase 
 ppo-u.5   18111197   pectinesterase 
 ppo-u.5   18110050   pectinesterase 
 mtr-u.5   11445926   pectinesterase 
 sly-u.5   PMEU1   pectin methylesterase 
 sot-r.1   PEST2   pectin methyl esterase 
 nta-r.1   107815259   pectinesterase/pectinesterase inhibitor U1-like 
 nta-r.1   107800682   pectinesterase-like 
 nta-r.1   107788953   pectinesterase/pectinesterase inhibitor U1 

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Top 50 coexpressed genes to PME3 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PME3 (ath-m.9 coexpression data)

CoexMap"820651"


athPME3 | Entrez gene ID : 820651      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta sbi cre tae zma osa bdi hvu
Paralog 10 3 3 3 2 2 2 3 1 1 1 3 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
GO BP
GO:0045490 [list] [network] pectin catabolic process  (6 genes)  IMP  
GO:0050829 [list] [network] defense response to Gram-negative bacterium  (23 genes)  IMP  
GO:0010187 [list] [network] negative regulation of seed germination  (29 genes)  IMP  
GO:0010043 [list] [network] response to zinc ion  (51 genes)  IMP  
GO:0051510 [list] [network] regulation of unidimensional cell growth  (82 genes)  IMP  
GO:0009624 [list] [network] response to nematode  (90 genes)  IMP  
GO:0080147 [list] [network] root hair cell development  (110 genes)  IMP  
GO:0042545 [list] [network] cell wall modification  (164 genes)  IEA  
GO:0050832 [list] [network] defense response to fungus  (282 genes)  IMP  
GO:0042742 [list] [network] defense response to bacterium  (363 genes)  IMP  
GO:0009620 [list] [network] response to fungus  (400 genes)  IEP  
GO:0009617 [list] [network] response to bacterium  (500 genes)  IEP  
GO:0048364 [list] [network] root development  (600 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0048046 [list] [network] apoplast  (340 genes)  HDA  
GO:0009505 [list] [network] plant-type cell wall  (504 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0030599 [list] [network] pectinesterase activity  (17 genes)  IDA IMP ISS  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_188048.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  nucl 1,  cyto 1,  extr 1,  vacu 1,  E.R. 1,  cysk_nucl 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for NP_188048.1)
Subcellular
localization
TargetP
scret 2  (predict for NP_188048.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PME3
ath-u.5
for
PME3
ath-r.7
for
PME3
ath-e.2
for
PME3
ath-m.4.bio
for
PME3
ath-m.4.hor
for
PME3
ath-m.4.lig
for
PME3
ath-m.4.str
for
PME3
ath-m.4.tis
for
PME3
ath-u.5
for
PME2
bra-r.6
for
103842134
bra-r.6
for
103842123
bra-r.6
for
103848519
bna-r.1
for
125597397
bna-r.1
for
106439508
bna-r.1
for
106439361
ghi-r.1
for
107907065
ghi-r.1
for
107896119
ghi-r.1
for
107902709
cit-r.1
for
PECS-1.1
cit-r.1
for
PME4
gma-u.5
for
100777646
gma-u.5
for
100776623
vvi-u.5
for
104880619
vvi-u.5
for
100251413
ppo-u.5
for
7476660
ppo-u.5
for
18111197
ppo-u.5
for
18110050
mtr-u.5
for
11445926
sly-u.5
for
PMEU1
sot-r.1
for
PEST2
nta-r.1
for
107815259
nta-r.1
for
107800682
nta-r.1
for
107788953


Ortholog ID: 4721
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma vvi vvi ppo ppo ppo mtr sly sot nta nta nta
Symbol PME3 PME2 LOC103842134 LOC103842123 LOC103848519 LOC106348821 LOC106367762 LOC106416420 LOC107896119 LOC107958345 LOC107958814 PECS-1.1 PME4 LOC100777646 LOC100776623 LOC104880619 LOC100251413 LOC7476660 LOC18110050 LOC18100688 LOC11445926 PMEU1 PEST2 LOC107815259 LOC107800682 LOC107777282
Function* pectin methylesterase 3 pectin methylesterase 2 pectinesterase/pectinesterase inhibitor 3 pectinesterase/pectinesterase inhibitor 3 pectinesterase 2 pectinesterase/pectinesterase inhibitor 3-like pectinesterase/pectinesterase inhibitor 3-like pectinesterase 2 pectinesterase pectinesterase pectinesterase-like pectinesterase putative thermostable pectinesterase pectinesterase/pectinesterase inhibitor pectinesterase pectinesterase pectinesterase pectinesterase pectinesterase pectinesterase pectinesterase pectin methylesterase pectin methyl esterase pectinesterase/pectinesterase inhibitor U1-like pectinesterase-like pectinesterase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00040 Pentose and glucuronate interconversions 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 5
bra04145 Phagosome 4
bra04517 IgSF CAM signaling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 4
ghi00330 Arginine and proline metabolism 4
ghi00040 Pentose and glucuronate interconversions 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00906 Carotenoid biosynthesis 2
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00040 Pentose and glucuronate interconversions 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00040 Pentose and glucuronate interconversions 4
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00052 Galactose metabolism 3
sly00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00901 Indole alkaloid biosynthesis 3
sot00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta04145 Phagosome 4
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
nta00040 Pentose and glucuronate interconversions 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820651 841820 103842134 103842123 103848519 106348821 106367762 106416420 107896119 107958345 107958814 102578056 102578034 100777646 100776623 104880619 100251413 7476660 18110050 18100688 11445926 544016 102577480 107815259 107800682 107777282
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