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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT3G16230   Putative eukaryotic LigT 
 ath-u.5   AT3G16230   Putative eukaryotic LigT 
 ath-r.7   AT3G16230   Putative eukaryotic LigT 
 ath-e.2   AT3G16230   Putative eukaryotic LigT 
 ath-m.4.bio   AT3G16230   Putative eukaryotic LigT 
 ath-m.4.hor   AT3G16230   Putative eukaryotic LigT 
 ath-m.4.lig   AT3G16230   Putative eukaryotic LigT 
 ath-m.4.str   AT3G16230   Putative eukaryotic LigT 
 ath-m.4.tis   AT3G16230   Putative eukaryotic LigT 
 ath-u.5   AT3G16220   Putative eukaryotic LigT 
 bra-r.6   103840113   uncharacterized LOC103840113 
 bra-r.6   103840105   uncharacterized LOC103840105 
 bra-r.6   103859659   activating signal cointegrator 1 complex subunit 1 
 bna-r.1   106373775   uncharacterized LOC106373775 
 bna-r.1   106376858   uncharacterized LOC106376858 
 bna-r.1   106380482   uncharacterized LOC106380482 
 ghi-r.1   107891710   uncharacterized LOC107891710 
 ghi-r.1   107889109   uncharacterized LOC107889109 
 ghi-r.1   107950695   uncharacterized LOC107950695 
 cit-r.1   102623371   uncharacterized LOC102623371 
 gma-u.5   100785531   uncharacterized LOC100785531 
 vvi-u.5   100266864   uncharacterized LOC100266864 
 ppo-u.5   7475086   uncharacterized LOC7475086 
 mtr-u.5   11420973   uncharacterized LOC11420973 
 sly-u.5   101268850   uncharacterized LOC101268850 
 sly-u.5   101249781   uncharacterized LOC101249781 
 sot-r.1   102596069   activating signal cointegrator 1 complex subunit 1 
 sot-r.1   102605557   activating signal cointegrator 1 complex subunit 1-like 
 nta-r.1   107817119   uncharacterized LOC107817119 
 nta-r.1   107814231   uncharacterized LOC107814231 
 nta-r.1   107802500   uncharacterized LOC107802500 
 osa-u.5   4325893   uncharacterized LOC4325893 
 osa-u.5   4325894   uncharacterized LOC4325894 
 zma-u.5   103649543   Activating signal cointegrator 1 complex subunit 1 
 tae-r.2   123060803   activating signal cointegrator 1 complex subunit 1 
 tae-r.2   123069365   activating signal cointegrator 1 complex subunit 1 
 hvu-r.1   123443263   activating signal cointegrator 1 complex subunit 1 
 sbi-r.1   8078103   activating signal cointegrator 1 complex subunit 1 
 bdi-r.1   100837554   activating signal cointegrator 1 complex subunit 1 
 cre-r.1   CHLRE_01g008000v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G16230 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G16230 (ath-m.9 coexpression data)

CoexMap"820869"


athAT3G16230 | Entrez gene ID : 820869      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 1 1 1 1 1 2 2 3 2 1 2 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006307 [list] [network] DNA alkylation repair  (2 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1764 genes)  IEA  
Protein NP_001189909.1 [sequence] [blastp]
NP_001189910.1 [sequence] [blastp]
NP_001319566.1 [sequence] [blastp]
NP_001326066.1 [sequence] [blastp]
NP_001326067.1 [sequence] [blastp]
NP_001326068.1 [sequence] [blastp]
NP_001326069.1 [sequence] [blastp]
NP_001326070.1 [sequence] [blastp]
NP_001326071.1 [sequence] [blastp]
NP_001326072.1 [sequence] [blastp]
NP_001326073.1 [sequence] [blastp]
NP_001326074.1 [sequence] [blastp]
NP_001326075.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  mito 2  (predict for NP_001189909.1)
cyto 4,  nucl 3,  chlo 1,  plas 1,  golg_plas 1  (predict for NP_001189910.1)
chlo 6,  chlo_mito 4,  mito 2  (predict for NP_001319566.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for NP_001326066.1)
chlo 6,  chlo_mito 5,  mito 3  (predict for NP_001326067.1)
chlo 6,  chlo_mito 5,  mito 3  (predict for NP_001326068.1)
chlo 6,  chlo_mito 5,  mito 3  (predict for NP_001326069.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for NP_001326070.1)
chlo 6,  chlo_mito 5,  mito 3  (predict for NP_001326071.1)
chlo 6,  chlo_mito 4,  mito 2  (predict for NP_001326072.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for NP_001326073.1)
cyto 4,  nucl 3,  chlo 1,  plas 1,  golg_plas 1  (predict for NP_001326074.1)
cyto 4,  cysk 2,  cyto_E.R. 2,  cyto_plas 2  (predict for NP_001326075.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_001189909.1)
other 3  (predict for NP_001189910.1)
mito 8  (predict for NP_001319566.1)
mito 8  (predict for NP_001326066.1)
mito 8  (predict for NP_001326067.1)
mito 8  (predict for NP_001326068.1)
mito 8  (predict for NP_001326069.1)
mito 8  (predict for NP_001326070.1)
mito 8  (predict for NP_001326071.1)
mito 8  (predict for NP_001326072.1)
mito 8  (predict for NP_001326073.1)
other 3  (predict for NP_001326074.1)
other 9  (predict for NP_001326075.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT3G16230
ath-u.5
for
AT3G16230
ath-r.7
for
AT3G16230
ath-e.2
for
AT3G16230
ath-m.4.bio
for
AT3G16230
ath-m.4.hor
for
AT3G16230
ath-m.4.lig
for
AT3G16230
ath-m.4.str
for
AT3G16230
ath-m.4.tis
for
AT3G16230
ath-u.5
for
AT3G16220
bra-r.6
for
103840113
bra-r.6
for
103840105
bra-r.6
for
103859659
bna-r.1
for
106373775
bna-r.1
for
106376858
bna-r.1
for
106380482
ghi-r.1
for
107891710
ghi-r.1
for
107889109
ghi-r.1
for
107950695
cit-r.1
for
102623371
gma-u.5
for
100785531
vvi-u.5
for
100266864
ppo-u.5
for
7475086
mtr-u.5
for
11420973
sly-u.5
for
101268850
sly-u.5
for
101249781
sot-r.1
for
102596069
sot-r.1
for
102605557
nta-r.1
for
107817119
nta-r.1
for
107814231
nta-r.1
for
107802500
osa-u.5
for
4325893
osa-u.5
for
4325894
zma-u.5
for
103649543
tae-r.2
for
123060803
tae-r.2
for
123069365
hvu-r.1
for
123443263
sbi-r.1
for
8078103
bdi-r.1
for
100837554
cre-r.1
for
CHLRE_01g008000v5


Ortholog ID: 4548
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit gma vvi ppo mtr sly sly sot sot nta nta nta osa osa zma tae tae hvu sbi bdi cre
Symbol AT3G16230 AT3G16220 LOC103840113 LOC103840105 LOC103859659 LOC106373775 LOC106439436 LOC106358143 LOC107891710 LOC107889109 LOC107950695 LOC102623371 LOC100785531 LOC100266864 LOC7475086 LOC11420973 LOC101268850 LOC101249781 LOC102596069 LOC102605557 LOC107817119 LOC107814231 LOC107802500 LOC4325893 LOC4325894 LOC103649543 LOC123060803 LOC123069365 LOC123443263 LOC8078103 LOC100837554 CHLRE_01g008000v5
Function* Putative eukaryotic LigT Putative eukaryotic LigT uncharacterized LOC103840113 uncharacterized LOC103840105 activating signal cointegrator 1 complex subunit 1 uncharacterized LOC106373775 activating signal cointegrator 1 complex subunit 1 activating signal cointegrator 1 complex subunit 1 uncharacterized LOC107891710 uncharacterized LOC107889109 uncharacterized LOC107950695 uncharacterized LOC102623371 uncharacterized LOC100785531 uncharacterized LOC100266864 uncharacterized LOC7475086 uncharacterized LOC11420973 uncharacterized LOC101268850 uncharacterized LOC101249781 activating signal cointegrator 1 complex subunit 1 activating signal cointegrator 1 complex subunit 1-like uncharacterized LOC107817119 uncharacterized LOC107814231 uncharacterized LOC107802500 uncharacterized LOC4325893 uncharacterized LOC4325894 Activating signal cointegrator 1 complex subunit 1 activating signal cointegrator 1 complex subunit 1 activating signal cointegrator 1 complex subunit 1 activating signal cointegrator 1 complex subunit 1 activating signal cointegrator 1 complex subunit 1 activating signal cointegrator 1 complex subunit 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 3
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03013 Nucleocytoplasmic transport 3
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03013 Nucleocytoplasmic transport 3
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00562 Inositol phosphate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820869 820868 103840113 103840105 103859659 106373775 106439436 106358143 107891710 107889109 107950695 102623371 100785531 100266864 7475086 11420973 101268850 101249781 102596069 102605557 107817119 107814231 107802500 4325893 4325894 103649543 123060803 123069365 123443263 8078103 100837554 5725856
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