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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-u.5   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-r.7   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-e.2   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-m.4.bio   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-m.4.hor   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-m.4.lig   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-m.4.str   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-m.4.tis   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-u.5   AT3G18960   AP2/B3-like transcriptional factor family protein 
 ath-u.5   AT4G01580   AP2/B3-like transcriptional factor family protein 
 ath-u.5   AT1G49475   AP2/B3-like transcriptional factor family protein 
 bra-r.6   103837597   B3 domain-containing transcription factor VRN1 
 bra-r.6   103859783   B3 domain-containing transcription factor VRN1-like 
 bna-r.1   106439072   B3 domain-containing protein REM19 
 bna-r.1   106423838   B3 domain-containing protein REM19 
 bna-r.1   106423833   B3 domain-containing protein At1g49475 
 ghi-r.1   107928907   B3 domain-containing transcription factor VRN1 
 ghi-r.1   107894225   B3 domain-containing protein REM19 
 cit-r.1   102626018   B3 domain-containing transcription factor VRN1-like 
 cit-r.1   102626309   B3 domain-containing transcription factor VRN1 
 gma-u.5   100819782   B3 domain-containing transcription factor VRN1 
 ppo-u.5   18097849   B3 domain-containing transcription factor VRN1 
 sot-r.1   102584288   B3 domain-containing protein At3g18960-like 
 sot-r.1   102594261   B3 domain-containing transcription factor VRN1-like 
 nta-r.1   107828317   B3 domain-containing protein At1g49475-like 
 nta-r.1   107804322   B3 domain-containing protein At1g49475-like 

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Top 50 coexpressed genes to VRN1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VRN1 (ath-m.9 coexpression data)

CoexMap"821432"


athVRN1 | Entrez gene ID : 821432      
Species ath bra bna ghi cit gma ppo sot nta osa mtr hvu tae cre zma bdi sbi sly vvi
Paralog 12 2 3 2 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010048 [list] [network] vernalization response  (18 genes)  IMP  
GO:0009909 [list] [network] regulation of flower development  (163 genes)  IMP  
GO CC
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
Protein NP_001326749.1 [sequence] [blastp]
NP_188529.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  mito 2,  nucl 2,  cyto_mito 1,  cyto 1,  plas 1,  extr 1,  cyto_plas 1  (predict for NP_001326749.1)
nucl 4,  chlo 3,  mito 1,  cyto_mito 1,  cyto 1,  extr 1  (predict for NP_188529.2)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for NP_001326749.1)
other 7,  mito 3  (predict for NP_188529.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
VRN1
ath-u.5
for
VRN1
ath-r.7
for
VRN1
ath-e.2
for
VRN1
ath-m.4.bio
for
VRN1
ath-m.4.hor
for
VRN1
ath-m.4.lig
for
VRN1
ath-m.4.str
for
VRN1
ath-m.4.tis
for
VRN1
ath-u.5
for
AT3G18960
ath-u.5
for
AT4G01580
ath-u.5
for
AT1G49475
bra-r.6
for
103837597
bra-r.6
for
103859783
bna-r.1
for
106439072
bna-r.1
for
106423838
bna-r.1
for
106423833
ghi-r.1
for
107928907
ghi-r.1
for
107894225
cit-r.1
for
102626018
cit-r.1
for
102626309
gma-u.5
for
100819782
ppo-u.5
for
18097849
sot-r.1
for
102584288
sot-r.1
for
102594261
nta-r.1
for
107828317
nta-r.1
for
107804322


Ortholog ID: 406
Species ath ath ath bra bra bra bna bna bna ghi cit gma gma vvi sly sot nta nta
Symbol AT3G18960 AT1G49475 RTV1 LOC103859783 LOC103869503 LOC103869505 LOC106423833 LOC106446858 LOC106446859 LOC121215282 LOC102626309 LOC100819782 LOC100806715 LOC100265476 LOC101263629 LOC102595417 LOC107828317 LOC107804322
Function* AP2/B3-like transcriptional factor family protein AP2/B3-like transcriptional factor family protein uncharacterized protein B3 domain-containing transcription factor VRN1-like B3 domain-containing transcription factor VRN1 B3 domain-containing protein At3g18960 B3 domain-containing protein At1g49475 B3 domain-containing protein At3g18960 B3 domain-containing transcription factor VRN1 B3 domain-containing transcription factor VRN1 B3 domain-containing transcription factor VRN1 B3 domain-containing transcription factor VRN1 B3 domain-containing transcription factor VRN1 cytochrome P450 82C4-like B3 domain-containing protein At4g01580-like B3 domain-containing transcription factor VRN1-like B3 domain-containing protein At1g49475-like B3 domain-containing protein At1g49475-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00280 Valine, leucine and isoleucine degradation 3
ath04075 Plant hormone signal transduction 3
ath00640 Propanoate metabolism 2
ath01230 Biosynthesis of amino acids 2
ath01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 2
ath04148 Efferocytosis 2
ath04517 IgSF CAM signaling 2
ath04518 Integrin signaling 2
ath04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 4
bra00061 Fatty acid biosynthesis 4
bra01212 Fatty acid metabolism 4
bra00780 Biotin metabolism 3
bra00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 4
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
gma00360 Phenylalanine metabolism 3
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03015 mRNA surveillance pathway 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 4
sot00010 Glycolysis / Gluconeogenesis 2
sot00051 Fructose and mannose metabolism 2
sot00562 Inositol phosphate metabolism 2
sot00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821429 841371 841372 103859783 103869503 103869505 106423833 106446858 106446859 121215282 102626309 100819782 100806715 100265476 101263629 102595417 107828317 107804322
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