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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   XRCC4   DNA ligase IV-binding protein 
 ath-u.5   XRCC4   DNA ligase IV-binding protein 
 ath-r.7   XRCC4   DNA ligase IV-binding protein 
 ath-e.2   XRCC4   DNA ligase IV-binding protein 
 ath-m.4.bio   XRCC4   DNA ligase IV-binding protein 
 ath-m.4.hor   XRCC4   DNA ligase IV-binding protein 
 ath-m.4.lig   XRCC4   DNA ligase IV-binding protein 
 ath-m.4.str   XRCC4   DNA ligase IV-binding protein 
 ath-m.4.tis   XRCC4   DNA ligase IV-binding protein 
 ath-u.5   AT1G61410   DNA double-strand break repair and VJ recombination XRCC4 
 bra-r.6   103833938   DNA repair protein XRCC4 
 bna-r.1   106453543   DNA repair protein XRCC4 
 ghi-r.1   107897875   DNA repair protein XRCC4 
 ghi-r.1   107893239   DNA repair protein XRCC4 
 cit-r.1   102621916   DNA repair protein XRCC4 
 gma-u.5   100798519   DNA repair protein XRCC4 
 gma-u.5   100797038   DNA repair protein XRCC4 
 vvi-u.5   100252901   DNA repair protein XRCC4 
 ppo-u.5   18102488   DNA repair protein XRCC4 
 mtr-u.5   11419613   DNA repair protein XRCC4 
 sly-u.5   101252591   DNA repair protein XRCC4 
 sot-r.1   102589344   DNA repair protein XRCC4-like 
 nta-r.1   107799982   DNA repair protein XRCC4 
 nta-r.1   107800895   DNA repair protein XRCC4 
 osa-u.5   4334058   DNA repair protein XRCC4 
 tae-r.2   123113259   DNA repair protein XRCC4 
 tae-r.2   100859940   DNA repair protein XRCC4 
 tae-r.2   123122774   DNA repair protein XRCC4 
 hvu-r.1   123452159   DNA repair protein XRCC4 
 sbi-r.1   8060493   DNA repair protein XRCC4 
 bdi-r.1   100845947   DNA repair protein XRCC4 

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Top 50 coexpressed genes to XRCC4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to XRCC4 (ath-m.9 coexpression data)

CoexMap"821885"


athXRCC4 | Entrez gene ID : 821885      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa tae hvu sbi bdi zma cre
Paralog 10 1 1 2 1 2 1 1 1 1 1 2 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03450 [list] [network] Non-homologous end-joining (8 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005524 [list] [network] ATP binding  (321 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001154639.1 [sequence] [blastp]
NP_188951.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  mito 3  (predict for NP_001154639.1)
nucl 6,  mito 3  (predict for NP_188951.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001154639.1)
other 8  (predict for NP_188951.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
XRCC4
ath-u.5
for
XRCC4
ath-r.7
for
XRCC4
ath-e.2
for
XRCC4
ath-m.4.bio
for
XRCC4
ath-m.4.hor
for
XRCC4
ath-m.4.lig
for
XRCC4
ath-m.4.str
for
XRCC4
ath-m.4.tis
for
XRCC4
ath-u.5
for
AT1G61410
bra-r.6
for
103833938
bna-r.1
for
106453543
ghi-r.1
for
107897875
ghi-r.1
for
107893239
cit-r.1
for
102621916
gma-u.5
for
100798519
gma-u.5
for
100797038
vvi-u.5
for
100252901
ppo-u.5
for
18102488
mtr-u.5
for
11419613
sly-u.5
for
101252591
sot-r.1
for
102589344
nta-r.1
for
107799982
nta-r.1
for
107800895
osa-u.5
for
4334058
tae-r.2
for
123113259
tae-r.2
for
100859940
tae-r.2
for
123122774
hvu-r.1
for
123452159
sbi-r.1
for
8060493
bdi-r.1
for
100845947


Ortholog ID: 10790
Species ath ath bra bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa tae tae tae hvu sbi bdi
Symbol XRCC4 AT1G61410 LOC103833938 LOC106453543 LOC107897875 LOC107893239 LOC102621916 LOC100798519 LOC100797038 LOC100252901 LOC18102488 LOC11419613 LOC101252591 LOC102589344 LOC107799982 LOC107800895 LOC4334058 LOC123113259 LOC100859940 LOC123122774 LOC123452159 LOC8060493 LOC100845947
Function* DNA ligase IV-binding protein DNA double-strand break repair and VJ recombination XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4-like DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03450 Non-homologous end-joining 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03450 Non-homologous end-joining 4
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03450 Non-homologous end-joining 2
gma00790 Folate biosynthesis 2
gma01240 Biosynthesis of cofactors 2
gma04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 5
vvi03060 Protein export 2
vvi03030 DNA replication 2
vvi03410 Base excision repair 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03450 Non-homologous end-joining 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03450 Non-homologous end-joining 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03450 Non-homologous end-joining 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 3
sbi03040 Spliceosome 2
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03450 Non-homologous end-joining 2
bdi03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821885 842435 103833938 106453543 107897875 107893239 102621916 100798519 100797038 100252901 18102488 11419613 101252591 102589344 107799982 107800895 4334058 123113259 100859940 123122774 123452159 8060493 100845947
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