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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106453543   DNA repair protein XRCC4 
 ath-u.5   XRCC4   DNA ligase IV-binding protein 
 ath-u.5   AT1G61410   DNA double-strand break repair and VJ recombination XRCC4 
 gma-u.5   100798519   DNA repair protein XRCC4 
 gma-u.5   100797038   DNA repair protein XRCC4 
 vvi-u.5   100252901   DNA repair protein XRCC4 
 ppo-u.5   18102488   DNA repair protein XRCC4 
 mtr-u.5   11419613   DNA repair protein XRCC4 
 sly-u.5   101252591   DNA repair protein XRCC4 
 osa-u.5   4334058   DNA repair protein XRCC4 

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Top 50 coexpressed genes to 106453543 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106453543 (bna-r.1 coexpression data)

CoexMap"106453543"


bnaLOC106453543 | Entrez gene ID : 106453543    
Species bna ath gma vvi ppo mtr sly osa sbi nta bra cre hvu cit bdi sot zma tae ghi
Paralog 1 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03450 [list] [network] Non-homologous end-joining (13 genes)
GO BP
GO:0051351 [list] [network] positive regulation of ligase activity  (2 genes)  IEA  
GO:0010165 [list] [network] response to X-ray  (5 genes)  IEA  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (21 genes)  IEA  
GO:0006310 [list] [network] DNA recombination  (692 genes)  IEA  
GO CC
GO:0005958 [list] [network] DNA-dependent protein kinase-DNA ligase 4 complex  (2 genes)  IEA  
GO:0032807 [list] [network] DNA ligase IV complex  (4 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0005524 [list] [network] ATP binding  (5995 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_022569511.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  mito 1  (predict for XP_022569511.2)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for XP_022569511.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106453543

.
ath-u.5
for
XRCC4

.
ath-u.5
for
AT1G61410

.
gma-u.5
for
100798519

.
gma-u.5
for
100797038

.
vvi-u.5
for
100252901

.
ppo-u.5
for
18102488

.
mtr-u.5
for
11419613

.
sly-u.5
for
101252591

.
osa-u.5
for
4334058

.


Ortholog ID: 10790
Species ath ath gma gma sly osa bra vvi ppo mtr tae tae hvu ghi ghi bna sbi sot cit bdi nta nta
Symbol XRCC4 AT1G61410 LOC100798519 LOC100797038 LOC101252591 LOC4334058 LOC103833938 LOC100252901 LOC18102488 LOC11419613 LOC100859940 LOC123113259 LOC123452159 LOC107897875 LOC107893239 LOC106453543 LOC8060493 LOC102589344 LOC102621916 LOC100845947 LOC107800895 LOC107799982
Function* DNA ligase IV-binding protein DNA double-strand break repair and VJ recombination XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4-like DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4 DNA repair protein XRCC4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03450 Non-homologous end-joining 2
gma00790 Folate biosynthesis 2
gma01240 Biosynthesis of cofactors 2
gma04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 5
vvi03060 Protein export 2
vvi03030 DNA replication 2
vvi03410 Base excision repair 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03450 Non-homologous end-joining 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03450 Non-homologous end-joining 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03450 Non-homologous end-joining 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03450 Non-homologous end-joining 4
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 3
sbi03040 Spliceosome 2
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03450 Non-homologous end-joining 2
bdi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03450 Non-homologous end-joining 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821885 842435 100798519 100797038 101252591 4334058 103833938 100252901 18102488 11419613 100859940 123113259 123452159 107897875 107893239 106453543 8060493 102589344 102621916 100845947 107800895 107799982
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