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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   TOPII   topoisomerase II 
 ath-u.5   TOPII   topoisomerase II 
 ath-r.7   TOPII   topoisomerase II 
 ath-e.2   TOPII   topoisomerase II 
 ath-m.4.bio   TOPII   topoisomerase II 
 ath-m.4.hor   TOPII   topoisomerase II 
 ath-m.4.lig   TOPII   topoisomerase II 
 ath-m.4.str   TOPII   topoisomerase II 
 ath-m.4.tis   TOPII   topoisomerase II 
 bra-r.6   103853975   DNA topoisomerase 2 
 bna-r.1   125610040   DNA topoisomerase 2-like 
 bna-r.1   106375558   DNA topoisomerase 2 
 ghi-r.1   107934399   DNA topoisomerase 2 
 ghi-r.1   121222575   DNA topoisomerase 2 
 cit-r.1   102610705   DNA topoisomerase 2 
 gma-u.5   100796974   DNA topoisomerase 2 
 gma-u.5   100787008   DNA topoisomerase 2 
 vvi-u.5   100253371   DNA topoisomerase 2 
 ppo-u.5   7463842   DNA topoisomerase 2 
 ppo-u.5   7467340   DNA topoisomerase 2 
 mtr-u.5   11405225   DNA topoisomerase 2 
 sly-u.5   101250733   DNA topoisomerase 2 
 sot-r.1   102583378   DNA topoisomerase 2 
 nta-r.1   107825899   DNA topoisomerase 2-like 
 nta-r.1   107792933   DNA topoisomerase 2-like 
 osa-u.5   4330426   DNA topoisomerase 2 
 zma-u.5   100193866   DNA topoisomerase 2 
 zma-u.5   100381789   DNA topoisomerase 2 
 tae-r.2   123061173   uncharacterized LOC123061173 
 tae-r.2   123056120   DNA topoisomerase 2 
 hvu-r.1   123401725   DNA topoisomerase 2 
 sbi-r.1   8085336   DNA topoisomerase 2 
 sbi-r.1   8073171   DNA topoisomerase 2 
 bdi-r.1   100839516   DNA topoisomerase 2 
 cre-r.1   CHLRE_01g009250v5   uncharacterized protein 

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Top 50 coexpressed genes to TOPII (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TOPII (ath-m.9 coexpression data)

CoexMap"821972"


athTOPII | Entrez gene ID : 821972      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 2 1 1 1 2 1 2 2 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006265 [list] [network] DNA topological change  (9 genes)  ISS  
GO:0007059 [list] [network] chromosome segregation  (67 genes)  ISS  
GO CC
GO:0009330 [list] [network] DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex  (3 genes)  ISS  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003918 [list] [network] DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity  (10 genes)  ISS  
GO:0003916 [list] [network] DNA topoisomerase activity  (14 genes)  ISS  
GO:0008094 [list] [network] ATP-dependent activity, acting on DNA  (56 genes)  ISS  
Protein NP_001118686.1 [sequence] [blastp]
NP_189031.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 3,  nucl 2  (predict for NP_001118686.1)
chlo 6,  nucl 2,  cyto 2,  cyto_nucl 2  (predict for NP_189031.1)
Subcellular
localization
TargetP
mito 3,  chlo 3  (predict for NP_001118686.1)
mito 3,  chlo 3  (predict for NP_189031.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
TOPII
ath-u.5
for
TOPII
ath-r.7
for
TOPII
ath-e.2
for
TOPII
ath-m.4.bio
for
TOPII
ath-m.4.hor
for
TOPII
ath-m.4.lig
for
TOPII
ath-m.4.str
for
TOPII
ath-m.4.tis
for
TOPII
bra-r.6
for
103853975
bna-r.1
for
125610040
bna-r.1
for
106375558
ghi-r.1
for
107934399
ghi-r.1
for
121222575
cit-r.1
for
102610705
gma-u.5
for
100796974
gma-u.5
for
100787008
vvi-u.5
for
100253371
ppo-u.5
for
7463842
ppo-u.5
for
7467340
mtr-u.5
for
11405225
sly-u.5
for
101250733
sot-r.1
for
102583378
nta-r.1
for
107825899
nta-r.1
for
107792933
osa-u.5
for
4330426
zma-u.5
for
100193866
zma-u.5
for
100381789
tae-r.2
for
123061173
tae-r.2
for
123056120
hvu-r.1
for
123401725
sbi-r.1
for
8085336
sbi-r.1
for
8073171
bdi-r.1
for
100839516
cre-r.1
for
CHLRE_01g009250v5


Ortholog ID: 5527
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae hvu sbi sbi bdi cre
Symbol TOPII LOC103853975 LOC125610040 LOC106375558 LOC107934399 LOC121222575 LOC102610705 LOC100796974 LOC100787008 LOC100253371 LOC7463842 LOC7467340 LOC11405225 LOC101250733 LOC102583378 LOC107825899 LOC107792933 LOC4330426 LOC100193866 LOC100381789 LOC123128092 LOC123401725 LOC8085336 LOC8073171 LOC100839516 CHLRE_01g009250v5
Function* topoisomerase II DNA topoisomerase 2 DNA topoisomerase 2-like DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2-like DNA topoisomerase 2-like DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 DNA topoisomerase 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 6
cit04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 2
osa00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 6
zma03430 Mismatch repair 2
zma03030 DNA replication 2
zma03410 Base excision repair 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821972 103853975 125610040 106375558 107934399 121222575 102610705 100796974 100787008 100253371 7463842 7467340 11405225 101250733 102583378 107825899 107792933 4330426 100193866 100381789 123128092 123401725 8085336 8073171 100839516 5725848
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