ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT3G48710	DEK domain-containing chromatin associated protein
ath-u.5	AT3G48710	DEK domain-containing chromatin associated protein
ath-r.7	AT3G48710	DEK domain-containing chromatin associated protein
ath-e.2	AT3G48710	DEK domain-containing chromatin associated protein
ath-m.4.bio	AT3G48710	DEK domain-containing chromatin associated protein
ath-m.4.hor	AT3G48710	DEK domain-containing chromatin associated protein
ath-m.4.lig	AT3G48710	DEK domain-containing chromatin associated protein
ath-m.4.str	AT3G48710	DEK domain-containing chromatin associated protein
ath-m.4.tis	AT3G48710	DEK domain-containing chromatin associated protein
ath-u.5	AT4G26630	DEK domain-containing chromatin associated protein
ath-u.5	AT5G55660	DEK domain-containing chromatin associated protein
ath-u.5	AT5G63550	DEK domain-containing chromatin associated protein
bra-r.6	103834839	DNA ligase 1
bra-r.6	103873766	protein DEK
bra-r.6	103873519	protein DEK
bna-r.1	106361348	DEK domain-containing chromatin-associated protein 3
bna-r.1	106347917	DEK domain-containing chromatin-associated protein 2-like
ghi-r.1	121211080	protein DEK
ghi-r.1	107922076	protein DEK
ghi-r.1	107953577	protein DEK
cit-r.1	102626375	DEK domain-containing chromatin-associated protein 1
cit-r.1	102609385	DEK domain-containing chromatin-associated protein 4
gma-u.5	100812631	DEK domain-containing protein
gma-u.5	100813123	protein DEK
gma-u.5	100812080	DEK domain-containing protein
vvi-u.5	100249691	DEK domain-containing chromatin-associated protein 4
vvi-u.5	100245819	DEK domain-containing chromatin-associated protein 1
ppo-u.5	18105862	DEK domain-containing chromatin-associated protein 1
ppo-u.5	18103817	DEK domain-containing chromatin-associated protein 1
ppo-u.5	7471874	DEK domain-containing chromatin-associated protein 3
mtr-u.5	11423522	myb-like protein X
mtr-u.5	25489146	eukaryotic translation initiation factor 5B
mtr-u.5	11435067	protein DEK
sly-u.5	101264938	DEK domain-containing chromatin-associated protein 1
sly-u.5	101254244	DEK domain-containing chromatin-associated protein 4
sly-u.5	101250613	DEK domain-containing chromatin-associated protein 4
sot-r.1	102606219	RNA-binding protein 25-like
sot-r.1	102597735	protein DEK-like
sot-r.1	102602937	protein DEK-like
nta-r.1	107831919	DEK domain-containing chromatin-associated protein 1-like
nta-r.1	107819895	DEK domain-containing chromatin-associated protein 4
nta-r.1	107809369	DEK domain-containing chromatin-associated protein 1
osa-u.5	4327229	DEK domain-containing chromatin-associated protein 1
osa-u.5	4333378	DEK domain-containing chromatin-associated protein 4
zma-u.5	103643665	protein DEK
zma-u.5	103626062	protein DEK
zma-u.5	103650830	protein DEK-like
tae-r.2	123091840	serine-aspartate repeat-containing protein I
tae-r.2	123097261	neurofilament medium polypeptide
tae-r.2	123085826	titin homolog
hvu-r.1	123445278	protein DEK-like
hvu-r.1	123448460	eukaryotic translation initiation factor 5B-like
sbi-r.1	8064530	protein DEK
sbi-r.1	8079820	protein DEK
sbi-r.1	8062983	trichohyalin
bdi-r.1	100841401	claspin
bdi-r.1	100828576	protein DEK
cre-r.1	CHLRE_12g513150v5	uncharacterized protein

Top 50 coexpressed genes to AT3G48710 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G48710 (ath-m.9 coexpression data)

CoexMap"824032"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045892 [list] [network] negative regulation of DNA-templated transcription	(200 genes)	ISS
GO:0006338 [list] [network] chromatin remodeling	(210 genes)	ISS
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1618 genes)	ISS

GO CC

GO:0005730 [list] [network] nucleolus	(394 genes)	ISS
GO:0005829 [list] [network] cytosol	(2593 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISS
GO:0005737 [list] [network] cytoplasm	(14000 genes)	ISM

GO MF

GO:0042393 [list] [network] histone binding	(50 genes)	ISS
GO:0003682 [list] [network] chromatin binding	(103 genes)	ISS

Protein

NP_190440.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for NP_190440.1)

Subcellular
localization
TargetP

other 8

(predict for NP_190440.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT3G48710	ath-u.5 for AT3G48710	ath-r.7 for AT3G48710	ath-e.2 for AT3G48710	ath-m.4.bio for AT3G48710	ath-m.4.hor for AT3G48710	ath-m.4.lig for AT3G48710	ath-m.4.str for AT3G48710	ath-m.4.tis for AT3G48710	ath-u.5 for AT4G26630	ath-u.5 for AT5G55660	ath-u.5 for AT5G63550	bra-r.6 for 103834839	bra-r.6 for 103873766	bra-r.6 for 103873519	bna-r.1 for 106361348	bna-r.1 for 106347917	ghi-r.1 for 121211080	ghi-r.1 for 107922076	ghi-r.1 for 107953577	cit-r.1 for 102626375	cit-r.1 for 102609385	gma-u.5 for 100812631	gma-u.5 for 100813123	gma-u.5 for 100812080	vvi-u.5 for 100249691	vvi-u.5 for 100245819	ppo-u.5 for 18105862	ppo-u.5 for 18103817	ppo-u.5 for 7471874	mtr-u.5 for 11423522	mtr-u.5 for 25489146	mtr-u.5 for 11435067	sly-u.5 for 101264938	sly-u.5 for 101254244	sly-u.5 for 101250613	sot-r.1 for 102606219	sot-r.1 for 102597735	sot-r.1 for 102602937	nta-r.1 for 107831919	nta-r.1 for 107819895	nta-r.1 for 107809369	osa-u.5 for 4327229	osa-u.5 for 4333378	zma-u.5 for 103643665	zma-u.5 for 103626062	zma-u.5 for 103650830	tae-r.2 for 123091840	tae-r.2 for 123097261	tae-r.2 for 123085826	hvu-r.1 for 123445278	hvu-r.1 for 123448460	sbi-r.1 for 8064530	sbi-r.1 for 8079820	sbi-r.1 for 8062983	bdi-r.1 for 100841401	bdi-r.1 for 100828576	cre-r.1 for CHLRE_12g513150v5

Ortholog

Ortholog ID: 1126

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

DEK domain-containing chromatin associated protein

myb-like protein X

protein DEK

DEK domain-containing chromatin-associated protein 3