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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT3G52260   Pseudouridine synthase family protein 
 ath-u.5   AT3G52260   Pseudouridine synthase family protein 
 ath-r.7   AT3G52260   Pseudouridine synthase family protein 
 ath-e.2   AT3G52260   Pseudouridine synthase family protein 
 ath-m.4.bio   AT3G52260   Pseudouridine synthase family protein 
 ath-m.4.hor   AT3G52260   Pseudouridine synthase family protein 
 ath-m.4.lig   AT3G52260   Pseudouridine synthase family protein 
 ath-m.4.str   AT3G52260   Pseudouridine synthase family protein 
 ath-m.4.tis   AT3G52260   Pseudouridine synthase family protein 
 bra-r.6   103860749   RNA pseudouridine synthase 5 
 ghi-r.1   121230750   RNA pseudouridine synthase 5 
 ghi-r.1   107891176   RNA pseudouridine synthase 5 
 cit-r.1   102607668   RNA pseudouridine synthase 5 
 gma-u.5   100810058   RNA pseudouridine synthase 5 
 vvi-u.5   100265032   RNA pseudouridine synthase 5 
 ppo-u.5   7457877   RNA pseudouridine synthase 5 
 mtr-u.5   11409136   RNA pseudouridine synthase 5 
 sly-u.5   101246017   RNA pseudouridine synthase 5 
 sot-r.1   102596314   RNA pseudouridine synthase 5 
 nta-r.1   107814662   RNA pseudouridine synthase 5 
 nta-r.1   107809259   RNA pseudouridine synthase 5-like 
 osa-u.5   4332490   RNA pseudouridine synthase 5-like 
 zma-u.5   100272393   uncharacterized LOC100272393 
 tae-r.2   123092486   RNA pseudouridine synthase 5 
 tae-r.2   123097798   RNA pseudouridine synthase 5 
 hvu-r.1   123448930   RNA pseudouridine synthase 5 
 sbi-r.1   110432012   RNA pseudouridine synthase 5 
 bdi-r.1   100842617   RNA pseudouridine synthase 5 
 cre-r.1   CHLRE_16g689100v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G52260 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G52260 (ath-m.9 coexpression data)

CoexMap"824391"


athAT3G52260 | Entrez gene ID : 824391      
Species ath bra ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bna
Paralog 9 1 2 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001190071.1 [sequence] [blastp]
NP_001326754.1 [sequence] [blastp]
NP_190794.2 [sequence] [blastp]
NP_974416.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 1,  mito 1,  cysk_nucl 1,  cyto 1,  plas 1,  vacu 1,  cyto_mito 1,  cyto_plas 1  (predict for NP_001190071.1)
cyto 4,  chlo 3,  nucl 3  (predict for NP_001326754.1)
cyto 5,  chlo 2,  nucl 1,  mito 1,  plas 1,  pero 1,  nucl_plas 1,  mito_plas 1  (predict for NP_190794.2)
cyto 5,  nucl 4,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_974416.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001190071.1)
other 8  (predict for NP_001326754.1)
other 8  (predict for NP_190794.2)
other 8  (predict for NP_974416.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT3G52260
ath-u.5
for
AT3G52260
ath-r.7
for
AT3G52260
ath-e.2
for
AT3G52260
ath-m.4.bio
for
AT3G52260
ath-m.4.hor
for
AT3G52260
ath-m.4.lig
for
AT3G52260
ath-m.4.str
for
AT3G52260
ath-m.4.tis
for
AT3G52260
bra-r.6
for
103860749
ghi-r.1
for
121230750
ghi-r.1
for
107891176
cit-r.1
for
102607668
gma-u.5
for
100810058
vvi-u.5
for
100265032
ppo-u.5
for
7457877
mtr-u.5
for
11409136
sly-u.5
for
101246017
sot-r.1
for
102596314
nta-r.1
for
107814662
nta-r.1
for
107809259
osa-u.5
for
4332490
zma-u.5
for
100272393
tae-r.2
for
123092486
tae-r.2
for
123097798
hvu-r.1
for
123448930
sbi-r.1
for
110432012
bdi-r.1
for
100842617
cre-r.1
for
CHLRE_16g689100v5


Ortholog ID: 9537
Species ath bra ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae hvu sbi bdi cre
Symbol AT3G52260 LOC103860749 LOC121230750 LOC107891176 LOC102607668 LOC100810058 LOC100265032 LOC7457877 LOC11409136 LOC101246017 LOC102596314 LOC107814662 LOC107809259 LOC4332490 LOC100272393 LOC123092486 LOC123448930 LOC110432012 LOC100842617 CHLRE_16g689100v5
Function* Pseudouridine synthase family protein RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5-like RNA pseudouridine synthase 5-like uncharacterized LOC100272393 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03013 Nucleocytoplasmic transport 3
cit03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
gma00860 Porphyrin metabolism 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00280 Valine, leucine and isoleucine degradation 4
vvi00640 Propanoate metabolism 4
vvi00410 beta-Alanine metabolism 3
vvi01200 Carbon metabolism 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 3
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00510 N-Glycan biosynthesis 2
osa00513 Various types of N-glycan biosynthesis 2
osa04141 Protein processing in endoplasmic reticulum 2
osa00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03450 Non-homologous end-joining 2
bdi03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824391 103860749 121230750 107891176 102607668 100810058 100265032 7457877 11409136 101246017 102596314 107814662 107809259 4332490 100272393 123092486 123448930 110432012 100842617 5724809
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