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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SIGC   RNApolymerase sigma-subunit C 
 ath-u.5   SIGC   RNApolymerase sigma-subunit C 
 ath-r.7   SIGC   RNApolymerase sigma-subunit C 
 ath-e.2   SIGC   RNApolymerase sigma-subunit C 
 ath-m.4.bio   SIGC   RNApolymerase sigma-subunit C 
 ath-m.4.hor   SIGC   RNApolymerase sigma-subunit C 
 ath-m.4.lig   SIGC   RNApolymerase sigma-subunit C 
 ath-m.4.str   SIGC   RNApolymerase sigma-subunit C 
 ath-m.4.tis   SIGC   RNApolymerase sigma-subunit C 
 bra-r.6   103863276   RNA polymerase sigma factor sigC 
 bna-r.1   106445536   RNA polymerase sigma factor sigC-like 
 bna-r.1   106380601   RNA polymerase sigma factor sigC 
 ghi-r.1   107897079   RNA polymerase sigma factor sigC 
 ghi-r.1   107901502   RNA polymerase sigma factor sigC 
 cit-r.1   102616677   RNA polymerase sigma factor sigC 
 gma-u.5   100802522   RNA polymerase sigma factor sigC 
 vvi-u.5   100252651   RNA polymerase sigma factor sigC 
 ppo-u.5   7462282   RNA polymerase sigma factor sigC 
 mtr-u.5   11429595   RNA polymerase sigma factor sigC 
 sly-u.5   101268893   RNA polymerase sigma factor sigC 
 sot-r.1   102599083   RNA polymerase sigma factor sigC 
 nta-r.1   107803694   RNA polymerase sigma factor sigC 
 nta-r.1   107808013   RNA polymerase sigma factor sigC-like 
 osa-u.5   4339778   RNA polymerase sigma factor sigC 
 zma-u.5   542081   sigma factor protein 
 tae-r.2   123183344   RNA polymerase sigma factor sigC 
 tae-r.2   123149263   RNA polymerase sigma factor sigC 
 tae-r.2   123070406   RNA polymerase sigma factor sigC 
 hvu-r.1   123452471   RNA polymerase sigma factor sigC 
 sbi-r.1   8066548   RNA polymerase sigma factor SigA1 
 bdi-r.1   100823148   RNA polymerase sigma factor sigC-like 
 bdi-r.1   104582577   RNA polymerase sigma factor sigC 

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Top 50 coexpressed genes to SIGC (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SIGC (ath-m.9 coexpression data)

CoexMap"824559"


athSIGC | Entrez gene ID : 824559      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0019685 [list] [network] photosynthesis, dark reaction  (7 genes)  NAS  
GO:0006352 [list] [network] DNA-templated transcription initiation  (35 genes)  IDA TAS  
GO:0071482 [list] [network] cellular response to light stimulus  (105 genes)  IEP  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1621 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (9 genes)  IMP ISS  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
Protein NP_001326036.1 [sequence] [blastp]
NP_190960.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001326036.1)
chlo 9,  nucl 1,  pero 1  (predict for NP_190960.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001326036.1)
chlo 9  (predict for NP_190960.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SIGC
ath-u.5
for
SIGC
ath-r.7
for
SIGC
ath-e.2
for
SIGC
ath-m.4.bio
for
SIGC
ath-m.4.hor
for
SIGC
ath-m.4.lig
for
SIGC
ath-m.4.str
for
SIGC
ath-m.4.tis
for
SIGC
bra-r.6
for
103863276
bna-r.1
for
106445536
bna-r.1
for
106380601
ghi-r.1
for
107897079
ghi-r.1
for
107901502
cit-r.1
for
102616677
gma-u.5
for
100802522
vvi-u.5
for
100252651
ppo-u.5
for
7462282
mtr-u.5
for
11429595
sly-u.5
for
101268893
sot-r.1
for
102599083
nta-r.1
for
107803694
nta-r.1
for
107808013
osa-u.5
for
4339778
zma-u.5
for
542081
tae-r.2
for
123183344
tae-r.2
for
123149263
tae-r.2
for
123070406
hvu-r.1
for
123452471
sbi-r.1
for
8066548
bdi-r.1
for
100823148
bdi-r.1
for
104582577


Ortholog ID: 10821
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi bdi
Symbol SIGC LOC103863276 LOC106445536 LOC106380601 LOC107897079 LOC107901502 LOC102616677 LOC100802522 LOC100252651 LOC7462282 LOC11429595 LOC101268893 LOC102599083 LOC107803694 LOC107808013 LOC4339778 LOC542081 LOC123183344 LOC123149263 LOC123070406 LOC123452471 LOC8066548 LOC100823148 LOC104582577
Function* RNApolymerase sigma-subunit C RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC-like RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC-like RNA polymerase sigma factor sigC sigma factor protein RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor SigA1 RNA polymerase sigma factor sigC-like RNA polymerase sigma factor sigC
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00230 Purine metabolism 2
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00230 Purine metabolism 2
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
osa00730 Thiamine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 6
tae01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00730 Thiamine metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824559 103863276 106445536 106380601 107897079 107901502 102616677 100802522 100252651 7462282 11429595 101268893 102599083 107803694 107808013 4339778 542081 123183344 123149263 123070406 123452471 8066548 100823148 104582577
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