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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT3G56120   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-u.5   AT3G56120   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-r.7   AT3G56120   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-e.2   AT3G56120   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.bio   AT3G56120   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.hor   AT3G56120   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.lig   AT3G56120   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.str   AT3G56120   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.tis   AT3G56120   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 bra-r.6   103841517   tRNA (guanine(37)-N1)-methyltransferase 1 
 bna-r.1   106368106   tRNA (guanine(37)-N1)-methyltransferase 1 
 bna-r.1   106432261   tRNA (guanine(37)-N1)-methyltransferase 1 
 ghi-r.1   107962659   tRNA (guanine(37)-N1)-methyltransferase 1 
 ghi-r.1   107901212   tRNA (guanine(37)-N1)-methyltransferase 1 
 cit-r.1   102626493   tRNA (guanine(37)-N1)-methyltransferase 2 
 gma-u.5   100812740   tRNA (guanine(37)-N1)-methyltransferase 2 
 gma-u.5   100790336   tRNA (guanine(37)-N1)-methyltransferase 2 
 vvi-u.5   100266181   tRNA (guanine(37)-N1)-methyltransferase 2-like 
 ppo-u.5   18107635   tRNA (guanine(37)-N1)-methyltransferase 2 
 mtr-u.5   25493940   tRNA (guanine(37)-N1)-methyltransferase 2 
 sly-u.5   101265822   tRNA (guanine(37)-N1)-methyltransferase 2 
 sot-r.1   102602194   tRNA (guanine(37)-N1)-methyltransferase 2 
 nta-r.1   107790878   tRNA (guanine(37)-N(1))-methyltransferase 2 
 nta-r.1   107765683   tRNA (guanine(37)-N(1))-methyltransferase 2 
 osa-u.5   9271157   tRNA (guanine(37)-N1)-methyltransferase 
 zma-u.5   100274674   tRNA (guanine(37)-N1)-methyltransferase 1 
 tae-r.2   123137410   tRNA (guanine(37)-N1)-methyltransferase 
 tae-r.2   123144756   tRNA (guanine(37)-N1)-methyltransferase 
 tae-r.2   123127651   tRNA (guanine(37)-N1)-methyltransferase 
 hvu-r.1   123402498   tRNA (guanine(37)-N1)-methyltransferase 
 sbi-r.1   8056501   tRNA (guanine(37)-N1)-methyltransferase 
 bdi-r.1   100840755   tRNA (guanine(37)-N1)-methyltransferase 
 cre-r.1   CHLRE_16g672041v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G56120 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G56120 (ath-m.9 coexpression data)

CoexMap"824778"


athAT3G56120 | Entrez gene ID : 824778      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0002939 [list] [network] tRNA N1-guanine methylation  (1 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0052906 [list] [network] tRNA (guanine(37)-N1)-methyltransferase activity  (1 genes)  IDA  
Protein NP_567034.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 1,  nucl 1,  vacu 1,  cysk 1,  cysk_nucl 1  (predict for NP_567034.1)
Subcellular
localization
TargetP
other 4  (predict for NP_567034.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT3G56120
ath-u.5
for
AT3G56120
ath-r.7
for
AT3G56120
ath-e.2
for
AT3G56120
ath-m.4.bio
for
AT3G56120
ath-m.4.hor
for
AT3G56120
ath-m.4.lig
for
AT3G56120
ath-m.4.str
for
AT3G56120
ath-m.4.tis
for
AT3G56120
bra-r.6
for
103841517
bna-r.1
for
106368106
bna-r.1
for
106432261
ghi-r.1
for
107962659
ghi-r.1
for
107901212
cit-r.1
for
102626493
gma-u.5
for
100812740
gma-u.5
for
100790336
vvi-u.5
for
100266181
ppo-u.5
for
18107635
mtr-u.5
for
25493940
sly-u.5
for
101265822
sot-r.1
for
102602194
nta-r.1
for
107790878
nta-r.1
for
107765683
osa-u.5
for
9271157
zma-u.5
for
100274674
tae-r.2
for
123137410
tae-r.2
for
123144756
tae-r.2
for
123127651
hvu-r.1
for
123402498
sbi-r.1
for
8056501
bdi-r.1
for
100840755
cre-r.1
for
CHLRE_16g672041v5


Ortholog ID: 10153
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT3G56120 LOC103841517 LOC106368106 LOC106432261 LOC107962659 LOC107901212 LOC102626493 LOC100812740 LOC100790336 LOC100266181 LOC18107635 LOC25493940 LOC101265822 LOC102602194 LOC107790878 LOC107765683 LOC9271157 LOC100274674 LOC123137410 LOC123144756 LOC123127651 LOC123402498 LOC8056501 LOC100840755 CHLRE_16g672041v5
Function* S-adenosyl-L-methionine-dependent methyltransferases superfamily protein tRNA (guanine(37)-N1)-methyltransferase 1 tRNA (guanine(37)-N1)-methyltransferase 1 tRNA (guanine(37)-N1)-methyltransferase 1 tRNA (guanine(37)-N1)-methyltransferase 1 tRNA (guanine(37)-N1)-methyltransferase 1 tRNA (guanine(37)-N1)-methyltransferase 2 tRNA (guanine(37)-N1)-methyltransferase 2 tRNA (guanine(37)-N1)-methyltransferase 2 tRNA (guanine(37)-N1)-methyltransferase 2-like tRNA (guanine(37)-N1)-methyltransferase 2 tRNA (guanine(37)-N1)-methyltransferase 2 tRNA (guanine(37)-N1)-methyltransferase 2 tRNA (guanine(37)-N1)-methyltransferase 2 tRNA (guanine(37)-N(1))-methyltransferase 2 tRNA (guanine(37)-N(1))-methyltransferase 2 tRNA (guanine(37)-N1)-methyltransferase tRNA (guanine(37)-N1)-methyltransferase 1 tRNA (guanine(37)-N1)-methyltransferase tRNA (guanine(37)-N1)-methyltransferase tRNA (guanine(37)-N1)-methyltransferase tRNA (guanine(37)-N1)-methyltransferase tRNA (guanine(37)-N1)-methyltransferase tRNA (guanine(37)-N1)-methyltransferase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 4
bra03013 Nucleocytoplasmic transport 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
bna03013 Nucleocytoplasmic transport 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03040 Spliceosome 2
ghi03015 mRNA surveillance pathway 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 3
gma03082 ATP-dependent chromatin remodeling 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 2
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03082 ATP-dependent chromatin remodeling 2
zma03018 RNA degradation 2
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae03013 Nucleocytoplasmic transport 4
tae03040 Spliceosome 4
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824778 103841517 106368106 106432261 107962659 107901212 102626493 100812740 100790336 100266181 18107635 25493940 101265822 102602194 107790878 107765683 9271157 100274674 123137410 123144756 123127651 123402498 8056501 100840755 5724827
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