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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SIP2   seed imbibition 2 
 ath-u.5   SIP2   seed imbibition 2 
 ath-r.7   SIP2   seed imbibition 2 
 ath-e.2   SIP2   seed imbibition 2 
 ath-m.4.bio   SIP2   seed imbibition 2 
 ath-m.4.hor   SIP2   seed imbibition 2 
 ath-m.4.lig   SIP2   seed imbibition 2 
 ath-m.4.str   SIP2   seed imbibition 2 
 ath-m.4.tis   SIP2   seed imbibition 2 
 ath-u.5   SIP1   seed imbibition 1 
 ath-u.5   DIN10   Raffinose synthase family protein 
 bra-r.6   103851337   probable galactinol--sucrose galactosyltransferase 6 
 bra-r.6   103845694   probable galactinol--sucrose galactosyltransferase 6 
 bra-r.6   103832560   probable galactinol--sucrose galactosyltransferase 1 
 bna-r.1   106354090   probable galactinol--sucrose galactosyltransferase 1 
 bna-r.1   111204673   probable galactinol--sucrose galactosyltransferase 6 
 bna-r.1   106451567   probable galactinol--sucrose galactosyltransferase 2 
 ghi-r.1   107941735   probable galactinol--sucrose galactosyltransferase 6 
 ghi-r.1   107931158   probable galactinol--sucrose galactosyltransferase 1 
 ghi-r.1   107921999   probable galactinol--sucrose galactosyltransferase 2 
 cit-r.1   102630645   probable galactinol--sucrose galactosyltransferase 1 
 cit-r.1   102620630   probable galactinol--sucrose galactosyltransferase 6 
 cit-r.1   102622912   probable galactinol--sucrose galactosyltransferase 2 
 gma-u.5   102665546   probable galactinol--sucrose galactosyltransferase 6 
 gma-u.5   102663960   probable galactinol--sucrose galactosyltransferase 6 
 gma-u.5   100785582   probable galactinol--sucrose galactosyltransferase 1 
 vvi-u.5   AGA   alpha-galactosidase 
 vvi-u.5   100253252   probable galactinol--sucrose galactosyltransferase 1 
 vvi-u.5   100268134   probable galactinol--sucrose galactosyltransferase 6 
 ppo-u.5   7485462   probable galactinol--sucrose galactosyltransferase 6 
 ppo-u.5   18103547   probable galactinol--sucrose galactosyltransferase 1 
 ppo-u.5   7473630   probable galactinol--sucrose galactosyltransferase 2 
 mtr-u.5   25499041   probable galactinol--sucrose galactosyltransferase 2 
 mtr-u.5   11439900   probable galactinol--sucrose galactosyltransferase 1 
 mtr-u.5   11445472   probable galactinol--sucrose galactosyltransferase 6 
 sly-u.5   101266532   probable galactinol--sucrose galactosyltransferase 6 
 sly-u.5   101254878   probable galactinol--sucrose galactosyltransferase 2 
 sly-u.5   SIP   alkaline alpha-galactosidase seed imbibition protein 
 sot-r.1   102600756   probable galactinol--sucrose galactosyltransferase 2 
 sot-r.1   102586320   probable galactinol--sucrose galactosyltransferase 6 
 sot-r.1   102598709   probable galactinol--sucrose galactosyltransferase 1 
 nta-r.1   107772596   putative galactinol--sucrose galactosyltransferase 1 
 nta-r.1   107773108   putative galactinol--sucrose galactosyltransferase 6 
 nta-r.1   107781630   putative galactinol--sucrose galactosyltransferase 6 
 osa-u.5   4342703   probable galactinol--sucrose galactosyltransferase 2 
 osa-u.5   9271916   probable galactinol--sucrose galactosyltransferase 2 
 osa-u.5   4352490   probable galactinol--sucrose galactosyltransferase 2 
 zma-u.5   606463   alkaline alpha galactosidase 1 
 zma-u.5   606431   alkaline alpha galactosidase 3 
 zma-u.5   103641497   probable galactinol--sucrose galactosyltransferase 1 
 tae-r.2   123165185   probable galactinol--sucrose galactosyltransferase 6 
 tae-r.2   100682404   probable galactinol--sucrose galactosyltransferase 2 
 tae-r.2   123166879   probable galactinol--sucrose galactosyltransferase 1 
 hvu-r.1   123412140   probable galactinol--sucrose galactosyltransferase 6 
 hvu-r.1   123439978   probable galactinol--sucrose galactosyltransferase 1 
 hvu-r.1   123411343   probable galactinol--sucrose galactosyltransferase 1 
 sbi-r.1   8055227   probable galactinol--sucrose galactosyltransferase 1 
 sbi-r.1   8057100   probable galactinol--sucrose galactosyltransferase 2 
 sbi-r.1   8076166   probable galactinol--sucrose galactosyltransferase 6 
 bdi-r.1   100832989   probable galactinol--sucrose galactosyltransferase 2 
 bdi-r.1   100839679   probable galactinol--sucrose galactosyltransferase 6 
 bdi-r.1   100831154   probable galactinol--sucrose galactosyltransferase 1 
 cre-r.1   CHLRE_16g666334v5   uncharacterized protein 

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Top 50 coexpressed genes to SIP2 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SIP2 (ath-m.9 coexpression data)

CoexMap"824919"


athSIP2 | Entrez gene ID : 824919      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00052 [list] [network] Galactose metabolism (56 genes)
GO BP
GO:0034484 [list] [network] raffinose catabolic process  (1 genes)  IDA  
GO:0006979 [list] [network] response to oxidative stress  (384 genes)  IEP  
GO CC
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0052692 [list] [network] raffinose alpha-galactosidase activity  (1 genes)  IDA  
GO:0047274 [list] [network] galactinol-sucrose galactosyltransferase activity  (5 genes)  IDA IEA  
Protein NP_191311.1 [sequence] [blastp]
NP_850715.1 [sequence] [blastp]
NP_974451.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1  (predict for NP_191311.1)
chlo 7,  nucl 1,  cyto 1,  cysk 1,  nucl_plas 1  (predict for NP_850715.1)
chlo 6,  cyto 3,  chlo_mito 3  (predict for NP_974451.1)
Subcellular
localization
TargetP
other 6  (predict for NP_191311.1)
other 6  (predict for NP_850715.1)
other 6  (predict for NP_974451.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SIP2
ath-u.5
for
SIP2
ath-r.7
for
SIP2
ath-e.2
for
SIP2
ath-m.4.bio
for
SIP2
ath-m.4.hor
for
SIP2
ath-m.4.lig
for
SIP2
ath-m.4.str
for
SIP2
ath-m.4.tis
for
SIP2
ath-u.5
for
SIP1
ath-u.5
for
DIN10
bra-r.6
for
103851337
bra-r.6
for
103845694
bra-r.6
for
103832560
bna-r.1
for
106354090
bna-r.1
for
111204673
bna-r.1
for
106451567
ghi-r.1
for
107941735
ghi-r.1
for
107931158
ghi-r.1
for
107921999
cit-r.1
for
102630645
cit-r.1
for
102620630
cit-r.1
for
102622912
gma-u.5
for
102665546
gma-u.5
for
102663960
gma-u.5
for
100785582
vvi-u.5
for
AGA
vvi-u.5
for
100253252
vvi-u.5
for
100268134
ppo-u.5
for
7485462
ppo-u.5
for
18103547
ppo-u.5
for
7473630
mtr-u.5
for
25499041
mtr-u.5
for
11439900
mtr-u.5
for
11445472
sly-u.5
for
101266532
sly-u.5
for
101254878
sly-u.5
for
SIP
sot-r.1
for
102600756
sot-r.1
for
102586320
sot-r.1
for
102598709
nta-r.1
for
107772596
nta-r.1
for
107773108
nta-r.1
for
107781630
osa-u.5
for
4342703
osa-u.5
for
9271916
osa-u.5
for
4352490
zma-u.5
for
606463
zma-u.5
for
606431
zma-u.5
for
103641497
tae-r.2
for
123165185
tae-r.2
for
100682404
tae-r.2
for
123166879
hvu-r.1
for
123412140
hvu-r.1
for
123439978
hvu-r.1
for
123411343
sbi-r.1
for
8055227
sbi-r.1
for
8057100
sbi-r.1
for
8076166
bdi-r.1
for
100832989
bdi-r.1
for
100839679
bdi-r.1
for
100831154
cre-r.1
for
CHLRE_16g666334v5


Ortholog ID: 1241
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol SIP2 SIP1 DIN10 LOC103851337 LOC103845694 LOC103841656 LOC111204673 LOC106418461 LOC106439490 LOC107931158 LOC107921999 LOC107918136 LOC102630645 LOC102620630 LOC102622912 LOC102665546 LOC102663960 LOC100785506 AGA LOC100253252 LOC100268134 LOC7485462 LOC7473630 LOC7468974 LOC25499041 LOC11439900 LOC25483406 LOC101266532 LOC101254878 SIP LOC102600756 LOC102586320 LOC102598709 LOC107772596 LOC107818824 LOC107781493 LOC9271916 LOC4340274 LOC4345925 LOC103641481 LOC103644222 LOC606464 LOC123165185 LOC123159330 LOC123068960 LOC123439978 LOC123411343 LOC123442945 LOC8057100 LOC8076166 LOC8078430 LOC100832989 LOC100839679 LOC100831154 CHLRE_16g666334v5
Function* seed imbibition 2 seed imbibition 1 Raffinose synthase family protein probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 1 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 1 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 1 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 1 alpha-galactosidase probable galactinol--sucrose galactosyltransferase 1 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 1 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 2 alkaline alpha-galactosidase seed imbibition protein probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 1 putative galactinol--sucrose galactosyltransferase 1 putative galactinol--sucrose galactosyltransferase 2 putative galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 1 probable galactinol--sucrose galactosyltransferase 1 probable galactinol--sucrose galactosyltransferase 2 alkaline alpha galactosidase 2 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 1 probable galactinol--sucrose galactosyltransferase 1 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 2 probable galactinol--sucrose galactosyltransferase 6 probable galactinol--sucrose galactosyltransferase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00052 Galactose metabolism 2
ath00330 Arginine and proline metabolism 2
ath00053 Ascorbate and aldarate metabolism 2
ath00562 Inositol phosphate metabolism 2
ath01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 6
bra00280 Valine, leucine and isoleucine degradation 4
bra00640 Propanoate metabolism 3
bra04146 Peroxisome 3
bra01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 4
bra00280 Valine, leucine and isoleucine degradation 2
bra01210 2-Oxocarboxylic acid metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00052 Galactose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00052 Galactose metabolism 5
bna04517 IgSF CAM signaling 2
bna04814 Motor proteins 2
bna00053 Ascorbate and aldarate metabolism 2
bna00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00052 Galactose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi00052 Galactose metabolism 2
ghi00430 Taurine and hypotaurine metabolism 2
ghi00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi00052 Galactose metabolism 2
ghi00430 Taurine and hypotaurine metabolism 2
ghi00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00670 One carbon pool by folate 3
cit01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 2
cit00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00561 Glycerolipid metabolism 2
cit00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00052 Galactose metabolism 4
gma00480 Glutathione metabolism 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00052 Galactose metabolism 4
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01250 Biosynthesis of nucleotide sugars 4
gma00052 Galactose metabolism 3
gma00520 Amino sugar and nucleotide sugar metabolism 3
gma00592 alpha-Linolenic acid metabolism 3
gma00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00053 Ascorbate and aldarate metabolism 2
vvi00562 Inositol phosphate metabolism 2
vvi01250 Biosynthesis of nucleotide sugars 2
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 4
vvi04075 Plant hormone signal transduction 4
vvi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00052 Galactose metabolism 4
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01250 Biosynthesis of nucleotide sugars 3
ppo00053 Ascorbate and aldarate metabolism 2
ppo00520 Amino sugar and nucleotide sugar metabolism 2
ppo00052 Galactose metabolism 2
ppo00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 4
ppo04141 Protein processing in endoplasmic reticulum 4
ppo04626 Plant-pathogen interaction 3
ppo00480 Glutathione metabolism 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 3
mtr04712 Circadian rhythm - plant 2
mtr00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00052 Galactose metabolism 2
mtr00460 Cyanoamino acid metabolism 2
mtr00500 Starch and sucrose metabolism 2
mtr00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 4
sly00052 Galactose metabolism 3
sly00310 Lysine degradation 2
sly00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 7
sly04145 Phagosome 7
sly04142 Lysosome 5
sly00541 Biosynthesis of various nucleotide sugars 2
sly01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00052 Galactose metabolism 4
sly00280 Valine, leucine and isoleucine degradation 3
sly00310 Lysine degradation 2
sly00260 Glycine, serine and threonine metabolism 2
sly00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00280 Valine, leucine and isoleucine degradation 6
sot01210 2-Oxocarboxylic acid metabolism 3
sot00330 Arginine and proline metabolism 3
sot00310 Lysine degradation 2
sot00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00280 Valine, leucine and isoleucine degradation 7
sot01210 2-Oxocarboxylic acid metabolism 4
sot00310 Lysine degradation 2
sot00640 Propanoate metabolism 2
sot00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 4
nta00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 4
nta00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00280 Valine, leucine and isoleucine degradation 6
osa01210 2-Oxocarboxylic acid metabolism 4
osa00640 Propanoate metabolism 3
osa01230 Biosynthesis of amino acids 3
osa00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 2
osa00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00052 Galactose metabolism 4
zma00240 Pyrimidine metabolism 2
zma01232 Nucleotide metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00052 Galactose metabolism 6
tae04120 Ubiquitin mediated proteolysis 3
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
hvu00350 Tyrosine metabolism 2
hvu00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00052 Galactose metabolism 2
sbi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 4
sbi04016 MAPK signaling pathway - plant 3
sbi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
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