ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	APG1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
ath-u.5	APG1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
ath-r.7	APG1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
ath-e.2	APG1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
ath-m.4.bio	APG1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
ath-m.4.hor	APG1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
ath-m.4.lig	APG1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
ath-m.4.str	APG1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
ath-m.4.tis	APG1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
bra-r.6	103830388	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
bna-r.1	106353332	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
bna-r.1	106410579	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
ghi-r.1	107927797	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
ghi-r.1	107941613	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
ghi-r.1	107924562	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
cit-r.1	102630396	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like
cit-r.1	102614553	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
gma-u.5	100783986	37 kDa inner envelope membrane protein, chloroplastic-like
gma-u.5	100806615	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
gma-u.5	100788766	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
vvi-u.5	100240861	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
vvi-u.5	100266496	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
ppo-u.5	7473437	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
ppo-u.5	7476869	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
ppo-u.5	7480667	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
mtr-u.5	11429739	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
mtr-u.5	25484476	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
sly-u.5	101267644	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
sly-u.5	101255662	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
sot-r.1	102604412	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like
sot-r.1	102592709	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like
nta-r.1	107814278	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
nta-r.1	107793127	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
nta-r.1	107760985	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
osa-u.5	4352791	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like
osa-u.5	107277102	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic-like
zma-u.5	100284931	uncharacterized LOC100284931
tae-r.2	123127840	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic
tae-r.2	123087377	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
tae-r.2	123090555	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
hvu-r.1	123401068	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic
hvu-r.1	123396437	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like
sbi-r.1	8071468	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
sbi-r.1	8071470	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
bdi-r.1	100837610	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
bdi-r.1	100831760	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
cre-r.1	CHLRE_14g625450v5	uncharacterized protein

Top 50 coexpressed genes to APG1 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to APG1 (ath-m.9 coexpression data)

CoexMap"825516"

[Cytoscape]

Annotation

functional annotation

KEGG

ath00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (40 genes)

ath01240 [list] [network] Biosynthesis of cofactors (237 genes)

GO BP

GO:0010236 [list] [network] plastoquinone biosynthetic process	(7 genes)	IMP
GO:0010189 [list] [network] vitamin E biosynthetic process	(10 genes)	IMP

GO CC

GO:0009706 [list] [network] chloroplast inner membrane	(66 genes)	ISS
GO:0009941 [list] [network] chloroplast envelope	(585 genes)	HDA
GO:0005829 [list] [network] cytosol	(2593 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	HDA IDA ISM
GO:0009536 [list] [network] plastid	(5443 genes)	HDA

GO MF

GO:0051741 [list] [network] 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	(1 genes)	IDA
GO:0102550 [list] [network] 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	(1 genes)	IEA
GO:0008757 [list] [network] S-adenosylmethionine-dependent methyltransferase activity	(128 genes)	ISS

Protein

NP_191900.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, vacu 1, golg 1

(predict for NP_191900.1)

Subcellular
localization
TargetP

chlo 9

(predict for NP_191900.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for APG1	ath-u.5 for APG1	ath-r.7 for APG1	ath-e.2 for APG1	ath-m.4.bio for APG1	ath-m.4.hor for APG1	ath-m.4.lig for APG1	ath-m.4.str for APG1	ath-m.4.tis for APG1	bra-r.6 for 103830388	bna-r.1 for 106353332	bna-r.1 for 106410579	ghi-r.1 for 107927797	ghi-r.1 for 107941613	ghi-r.1 for 107924562	cit-r.1 for 102630396	cit-r.1 for 102614553	gma-u.5 for 100783986	gma-u.5 for 100806615	gma-u.5 for 100788766	vvi-u.5 for 100240861	vvi-u.5 for 100266496	ppo-u.5 for 7473437	ppo-u.5 for 7476869	ppo-u.5 for 7480667	mtr-u.5 for 11429739	mtr-u.5 for 25484476	sly-u.5 for 101267644	sly-u.5 for 101255662	sot-r.1 for 102604412	sot-r.1 for 102592709	nta-r.1 for 107814278	nta-r.1 for 107793127	nta-r.1 for 107760985	osa-u.5 for 4352791	osa-u.5 for 107277102	zma-u.5 for 100284931	tae-r.2 for 123127840	tae-r.2 for 123087377	tae-r.2 for 123090555	hvu-r.1 for 123401068	hvu-r.1 for 123396437	sbi-r.1 for 8071468	sbi-r.1 for 8071470	bdi-r.1 for 100837610	bdi-r.1 for 100831760	cre-r.1 for CHLRE_14g625450v5

Ortholog

Ortholog ID: 3243

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

APG1

Function^*

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic

37 kDa inner envelope membrane protein, chloroplastic-like

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic-like

uncharacterized LOC100284931

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	5
ath01230	Biosynthesis of amino acids	5
ath00710	Carbon fixation by Calvin cycle	4
ath03010	Ribosome	4
ath00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	5
bra00630	Glyoxylate and dicarboxylate metabolism	3
bra00785	Lipoic acid metabolism	3
bra01240	Biosynthesis of cofactors	2
bra00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
ghi01240	Biosynthesis of cofactors	4
ghi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
ghi01240	Biosynthesis of cofactors	4
ghi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
ghi01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	10
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	5
gma00710	Carbon fixation by Calvin cycle	4
gma00620	Pyruvate metabolism	3
gma00010	Glycolysis / Gluconeogenesis	3
gma01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01240	Biosynthesis of cofactors	5
gma00010	Glycolysis / Gluconeogenesis	4
gma01200	Carbon metabolism	4
gma00785	Lipoic acid metabolism	3
gma03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	6
gma01200	Carbon metabolism	6
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00195	Photosynthesis	5
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	7
vvi00710	Carbon fixation by Calvin cycle	5
vvi01240	Biosynthesis of cofactors	3
vvi00260	Glycine, serine and threonine metabolism	2
vvi00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	3
ppo00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo01240	Biosynthesis of cofactors	3
ppo00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ppo00240	Pyrimidine metabolism	2
ppo01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	6
ppo03010	Ribosome	3
ppo00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ppo00860	Porphyrin metabolism	2
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr01200	Carbon metabolism	3
mtr00710	Carbon fixation by Calvin cycle	2
mtr01230	Biosynthesis of amino acids	2
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	3
mtr00630	Glyoxylate and dicarboxylate metabolism	2
mtr01200	Carbon metabolism	2
mtr04146	Peroxisome	2
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01240	Biosynthesis of cofactors	2
sly00010	Glycolysis / Gluconeogenesis	2
sly00620	Pyruvate metabolism	2
sly01200	Carbon metabolism	2
sly01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	6
sly00630	Glyoxylate and dicarboxylate metabolism	5
sly00260	Glycine, serine and threonine metabolism	3
sly00710	Carbon fixation by Calvin cycle	3
sly00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	3
sot01230	Biosynthesis of amino acids	2
sot00061	Fatty acid biosynthesis	2
sot01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00710	Carbon fixation by Calvin cycle	3
sot01200	Carbon metabolism	3
sot01230	Biosynthesis of amino acids	3
sot00860	Porphyrin metabolism	2
sot00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	6
nta01240	Biosynthesis of cofactors	4
nta00230	Purine metabolism	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	6
osa00710	Carbon fixation by Calvin cycle	5
osa01230	Biosynthesis of amino acids	5
osa03010	Ribosome	4
osa00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01240	Biosynthesis of cofactors	2
osa00910	Nitrogen metabolism	2
osa01310	Nitrogen cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	8
zma00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
zma01240	Biosynthesis of cofactors	2
zma00061	Fatty acid biosynthesis	2
zma01040	Biosynthesis of unsaturated fatty acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	5
tae00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
tae00460	Cyanoamino acid metabolism	2
tae00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	4
tae00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	4
tae00053	Ascorbate and aldarate metabolism	3
tae00130	Ubiquinone and other terpenoid-quinone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2
hvu04145	Phagosome	2
hvu04517	IgSF CAM signaling	2
hvu04814	Motor proteins	2
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	3
sbi00710	Carbon fixation by Calvin cycle	2
sbi01200	Carbon metabolism	2
sbi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
sbi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4
sbi01240	Biosynthesis of cofactors	3
sbi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
sbi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	3
bdi01230	Biosynthesis of amino acids	3
bdi00190	Oxidative phosphorylation	2
bdi00195	Photosynthesis	2
bdi00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00250	Alanine, aspartate and glutamate metabolism	4
bdi00410	beta-Alanine metabolism	4
bdi00430	Taurine and hypotaurine metabolism	4
bdi00650	Butanoate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	4
cre00130	Ubiquinone and other terpenoid-quinone biosynthesis	3

Expression

Expression pattern

Entrez Gene ID^*

825516

103830388

106353332

106410579

107924562

107924420

107915302

102630396

102614553

100783986

100806615

100788766

100240861

100266496

7473437

7476869

7480667

11429739

25484476

101267644

101255662

102604412

102592709

107814278

107760985

107773365

4352791

107277102

100284931

123127840

123087377

123137605

123401068

123396437

123450973

8071468

8071470

100837610

100831760

5718296

The preparation time of this page was 2.6 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	2	3	2	3	2	3	2	2	2	3	2	1	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to APG1 (ath-m.9 coexpression data)

Top 50 enrichment test to APG1 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**