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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   EMB3126   Ribosomal protein L1p/L10e family 
 ath-u.5   EMB3126   Ribosomal protein L1p/L10e family 
 ath-r.7   EMB3126   Ribosomal protein L1p/L10e family 
 ath-e.2   EMB3126   Ribosomal protein L1p/L10e family 
 ath-m.4.bio   EMB3126   Ribosomal protein L1p/L10e family 
 ath-m.4.hor   EMB3126   Ribosomal protein L1p/L10e family 
 ath-m.4.lig   EMB3126   Ribosomal protein L1p/L10e family 
 ath-m.4.str   EMB3126   Ribosomal protein L1p/L10e family 
 ath-m.4.tis   EMB3126   Ribosomal protein L1p/L10e family 
 bra-r.6   103862735   50S ribosomal protein L1, chloroplastic 
 bna-r.1   106396751   50S ribosomal protein L1, chloroplastic 
 bna-r.1   106444921   50S ribosomal protein L1, chloroplastic-like 
 ghi-r.1   107900766   50S ribosomal protein L1, chloroplastic 
 ghi-r.1   107933969   50S ribosomal protein L1, chloroplastic 
 cit-r.1   102631176   50S ribosomal protein L1, chloroplastic 
 gma-u.5   100819124   50S ribosomal protein L1, chloroplastic 
 gma-u.5   100808549   50S ribosomal protein L1, chloroplastic 
 vvi-u.5   100244868   large ribosomal subunit protein uL1c 
 ppo-u.5   7482305   50S ribosomal protein L1, chloroplastic 
 ppo-u.5   7463834   50S ribosomal protein L1, chloroplastic 
 mtr-u.5   25480072   50S ribosomal protein L1, chloroplastic 
 sly-u.5   101256124   large ribosomal subunit protein uL1c 
 sot-r.1   102605048   50S ribosomal protein L1, chloroplastic 
 nta-r.1   107824444   large ribosomal subunit protein uL1c 
 nta-r.1   107809424   large ribosomal subunit protein uL1c 
 osa-u.5   4338667   large ribosomal subunit protein uL1c 
 zma-u.5   100283907   50S ribosomal protein L1, chloroplastic-like 
 tae-r.2   123130973   50S ribosomal protein L1, chloroplastic 
 tae-r.2   123054242   50S ribosomal protein L1, chloroplastic 
 tae-r.2   123181866   50S ribosomal protein L1, chloroplastic 
 hvu-r.1   123439781   50S ribosomal protein L1, chloroplastic 
 sbi-r.1   8082351   50S ribosomal protein L1, chloroplastic 
 bdi-r.1   100842737   50S ribosomal protein L1, chloroplastic 
 cre-r.1   CHLRE_02g088900v5   uncharacterized protein 

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Top 50 coexpressed genes to EMB3126 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB3126 (ath-m.9 coexpression data)

CoexMap"825524"


athEMB3126 | Entrez gene ID : 825524      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 2 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0006412 [list] [network] translation  (926 genes)  IEA  
GO CC
GO:0015934 [list] [network] large ribosomal subunit  (133 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (75 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_191908.1 [sequence] [blastp]
NP_974486.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_191908.1)
chlo 9  (predict for NP_974486.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_191908.1)
chlo 9  (predict for NP_974486.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
EMB3126
ath-u.5
for
EMB3126
ath-r.7
for
EMB3126
ath-e.2
for
EMB3126
ath-m.4.bio
for
EMB3126
ath-m.4.hor
for
EMB3126
ath-m.4.lig
for
EMB3126
ath-m.4.str
for
EMB3126
ath-m.4.tis
for
EMB3126
bra-r.6
for
103862735
bna-r.1
for
106396751
bna-r.1
for
106444921
ghi-r.1
for
107900766
ghi-r.1
for
107933969
cit-r.1
for
102631176
gma-u.5
for
100819124
gma-u.5
for
100808549
vvi-u.5
for
100244868
ppo-u.5
for
7482305
ppo-u.5
for
7463834
mtr-u.5
for
25480072
sly-u.5
for
101256124
sot-r.1
for
102605048
nta-r.1
for
107824444
nta-r.1
for
107809424
osa-u.5
for
4338667
zma-u.5
for
100283907
tae-r.2
for
123130973
tae-r.2
for
123054242
tae-r.2
for
123181866
hvu-r.1
for
123439781
sbi-r.1
for
8082351
bdi-r.1
for
100842737
cre-r.1
for
CHLRE_02g088900v5


Ortholog ID: 9555
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol EMB3126 LOC103862735 LOC106396751 LOC106444921 LOC107900766 LOC107933969 LOC102631176 LOC100819124 LOC100808549 LOC100244868 LOC7482305 LOC7463834 LOC25480072 LOC101256124 LOC102605048 LOC107824444 LOC107809424 LOC4338667 LOC100283907 LOC123130973 LOC123054242 LOC123181866 LOC123439781 LOC8082351 LOC100842737 CHLRE_02g088900v5
Function* Ribosomal protein L1p/L10e family 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic-like 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic large ribosomal subunit protein uL1c 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic large ribosomal subunit protein uL1c 50S ribosomal protein L1, chloroplastic large ribosomal subunit protein uL1c large ribosomal subunit protein uL1c large ribosomal subunit protein uL1c 50S ribosomal protein L1, chloroplastic-like 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
bna00620 Pyruvate metabolism 2
bna00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
bna00620 Pyruvate metabolism 2
bna00190 Oxidative phosphorylation 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi00790 Folate biosynthesis 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi00790 Folate biosynthesis 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 3
ppo03010 Ribosome 3
ppo00710 Carbon fixation by Calvin cycle 2
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 11
nta03060 Protein export 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03060 Protein export 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 11
cre00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825524 103862735 106396751 106444921 107900766 107933969 102631176 100819124 100808549 100244868 7482305 7463834 25480072 101256124 102605048 107824444 107809424 4338667 100283907 123130973 123054242 123181866 123439781 8082351 100842737 5727445
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