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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g088900v5   uncharacterized protein 
 ath-u.5   EMB3126   Ribosomal protein L1p/L10e family 
 gma-u.5   100819124   50S ribosomal protein L1, chloroplastic 
 gma-u.5   100808549   50S ribosomal protein L1, chloroplastic 
 sly-u.5   101256124   large ribosomal subunit protein uL1c 
 osa-u.5   4338667   large ribosomal subunit protein uL1c 
 zma-u.5   100283907   50S ribosomal protein L1, chloroplastic-like 
 vvi-u.5   100244868   large ribosomal subunit protein uL1c 
 ppo-u.5   7482305   50S ribosomal protein L1, chloroplastic 
 ppo-u.5   7463834   50S ribosomal protein L1, chloroplastic 
 mtr-u.5   25480072   50S ribosomal protein L1, chloroplastic 

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Top 50 coexpressed genes to CHLRE_02g088900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g088900v5 (cre-r.1 coexpression data)

CoexMap"5727445"


creCHLRE_02g088900v5 | Entrez gene ID : 5727445      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03010 [list] [network] Ribosome (149 genes)
GO BP
GO:0006412 [list] [network] translation  (268 genes)  IEA  
GO CC
GO:0015934 [list] [network] large ribosomal subunit  (72 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (164 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001701761.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_001701761.1)
Subcellular
localization
TargetP
mito 8,  chlo 4  (predict for XP_001701761.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g088900v5

.
ath-u.5
for
EMB3126

.
gma-u.5
for
100819124

.
gma-u.5
for
100808549

.
sly-u.5
for
101256124

.
osa-u.5
for
4338667

.
zma-u.5
for
100283907

.
vvi-u.5
for
100244868

.
ppo-u.5
for
7482305

.
ppo-u.5
for
7463834

.
mtr-u.5
for
25480072

.


Ortholog ID: 9555
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol EMB3126 LOC100808549 LOC100819124 LOC101256124 LOC4338667 LOC100283907 LOC103862735 LOC100244868 LOC7463834 LOC7482305 LOC25480072 LOC123181866 LOC123130973 LOC123439781 LOC107933969 LOC107900766 LOC106396751 LOC106444921 CHLRE_02g088900v5 LOC8082351 LOC102605048 LOC102631176 LOC100842737 LOC107824444 LOC107809424
Function* Ribosomal protein L1p/L10e family 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic large ribosomal subunit protein uL1c large ribosomal subunit protein uL1c 50S ribosomal protein L1, chloroplastic-like 50S ribosomal protein L1, chloroplastic large ribosomal subunit protein uL1c 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic-like uncharacterized protein 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic 50S ribosomal protein L1, chloroplastic large ribosomal subunit protein uL1c large ribosomal subunit protein uL1c
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 3
ppo03010 Ribosome 3
ppo00710 Carbon fixation by Calvin cycle 2
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi00790 Folate biosynthesis 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi00790 Folate biosynthesis 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
bna00620 Pyruvate metabolism 2
bna00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
bna00620 Pyruvate metabolism 2
bna00190 Oxidative phosphorylation 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 11
cre00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 11
nta03060 Protein export 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03060 Protein export 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825524 100808549 100819124 101256124 4338667 100283907 103862735 100244868 7463834 7482305 25480072 123181866 123130973 123439781 107933969 107900766 106396751 106444921 5727445 8082351 102605048 102631176 100842737 107824444 107809424
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