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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PSBQ-2   photosystem II subunit Q-2 
 ath-u.5   PSBQ-2   photosystem II subunit Q-2 
 ath-r.7   PSBQ-2   photosystem II subunit Q-2 
 ath-e.2   PSBQ-2   photosystem II subunit Q-2 
 ath-m.4.bio   PSBQ-2   photosystem II subunit Q-2 
 ath-m.4.hor   PSBQ-2   photosystem II subunit Q-2 
 ath-m.4.lig   PSBQ-2   photosystem II subunit Q-2 
 ath-m.4.str   PSBQ-2   photosystem II subunit Q-2 
 ath-m.4.tis   PSBQ-2   photosystem II subunit Q-2 
 ath-u.5   PSBQA   photosystem II subunit QA 
 bra-r.6   103858917   oxygen-evolving enhancer protein 3-1, chloroplastic 
 bra-r.6   103839762   oxygen-evolving enhancer protein 3-2, chloroplastic 
 bna-r.1   106440261   oxygen-evolving enhancer protein 3-1, chloroplastic-like 
 bna-r.1   125580673   oxygen-evolving enhancer protein 3-1, chloroplastic-like 
 bna-r.1   106349077   oxygen-evolving enhancer protein 3-2, chloroplastic-like 
 ghi-r.1   107958243   oxygen-evolving enhancer protein 3, chloroplastic 
 ghi-r.1   107941101   oxygen-evolving enhancer protein 3, chloroplastic 
 ghi-r.1   107929839   oxygen-evolving enhancer protein 3, chloroplastic 
 cit-r.1   102620317   oxygen-evolving enhancer protein 3, chloroplastic 
 gma-u.5   100499794   uncharacterized LOC100499794 
 gma-u.5   100306034   uncharacterized LOC100306034 
 vvi-u.5   100240959   oxygen-evolving enhancer protein 3, chloroplastic 
 ppo-u.5   7495298   oxygen-evolving enhancer protein 3-2, chloroplastic 
 ppo-u.5   7490773   oxygen-evolving enhancer protein 3, chloroplastic 
 mtr-u.5   25499987   oxygen-evolving enhancer protein 3-2, chloroplastic 
 sly-u.5   PsbQ   photosystem II oxygen-evolving complex protein 3 
 sot-r.1   102602034   oxygen-evolving enhancer protein 3-2, chloroplastic 
 nta-r.1   107828191   oxygen-evolving enhancer protein 3-2, chloroplastic 
 nta-r.1   107816469   oxygen-evolving enhancer protein 3-2, chloroplastic-like 
 nta-r.1   107767928   oxygen-evolving enhancer protein 3-2, chloroplastic-like 
 osa-u.5   4343515   oxygen-evolving enhancer protein 3, chloroplastic-like 
 zma-u.5   542279   oxygen-evolving enhancer protein 3-1, chloroplast 
 zma-u.5   103647735   oxygen-evolving enhancer protein 3-1, chloroplastic-like 
 tae-r.2   100049048   oxygen-evolving enhancer protein 3, chloroplastic 
 tae-r.2   123052491   oxygen-evolving enhancer protein 3, chloroplastic 
 hvu-r.1   123425803   oxygen-evolving enhancer protein 3, chloroplastic-like 
 sbi-r.1   8081712   oxygen-evolving enhancer protein 3-1, chloroplastic 
 cre-r.1   CHLRE_08g372450v5   uncharacterized protein 

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Top 50 coexpressed genes to PSBQ-2 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PSBQ-2 (ath-m.9 coexpression data)

CoexMap"825866"


athPSBQ-2 | Entrez gene ID : 825866      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi cre bdi
Paralog 10 2 3 3 1 2 1 2 1 1 1 3 1 2 2 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00195 [list] [network] Photosynthesis (77 genes)
GO BP
GO CC
GO:0009543 [list] [network] chloroplast thylakoid lumen  (52 genes)  HDA  
GO:0031977 [list] [network] thylakoid lumen  (69 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0048046 [list] [network] apoplast  (340 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
Protein NP_001319873.1 [sequence] [blastp]
NP_192427.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1,  E.R._vacu 1  (predict for NP_001319873.1)
chlo 9,  mito 1,  E.R._vacu 1  (predict for NP_192427.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001319873.1)
chlo 7  (predict for NP_192427.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PSBQ-2
ath-u.5
for
PSBQ-2
ath-r.7
for
PSBQ-2
ath-e.2
for
PSBQ-2
ath-m.4.bio
for
PSBQ-2
ath-m.4.hor
for
PSBQ-2
ath-m.4.lig
for
PSBQ-2
ath-m.4.str
for
PSBQ-2
ath-m.4.tis
for
PSBQ-2
ath-u.5
for
PSBQA
bra-r.6
for
103858917
bra-r.6
for
103839762
bna-r.1
for
106440261
bna-r.1
for
125580673
bna-r.1
for
106349077
ghi-r.1
for
107958243
ghi-r.1
for
107941101
ghi-r.1
for
107929839
cit-r.1
for
102620317
gma-u.5
for
100499794
gma-u.5
for
100306034
vvi-u.5
for
100240959
ppo-u.5
for
7495298
ppo-u.5
for
7490773
mtr-u.5
for
25499987
sly-u.5
for
PsbQ
sot-r.1
for
102602034
nta-r.1
for
107828191
nta-r.1
for
107816469
nta-r.1
for
107767928
osa-u.5
for
4343515
zma-u.5
for
542279
zma-u.5
for
103647735
tae-r.2
for
100049048
tae-r.2
for
123052491
hvu-r.1
for
123425803
sbi-r.1
for
8081712
cre-r.1
for
CHLRE_08g372450v5


Ortholog ID: 5784
Species ath ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta nta osa zma zma tae tae hvu sbi cre
Symbol PSBQ-2 PSBQA LOC103858917 LOC103839762 LOC106440261 LOC106349077 LOC106406479 LOC107924939 LOC107905958 LOC107901779 LOC102620317 LOC100499794 LOC100306034 LOC100240959 LOC7495298 LOC7490773 LOC25499987 PsbQ LOC102602034 LOC107828191 LOC107816469 LOC107767928 LOC4343515 LOC542279 LOC103647735 LOC100049048 LOC123052491 LOC123425803 LOC8081712 CHLRE_08g372450v5
Function* photosystem II subunit Q-2 photosystem II subunit QA oxygen-evolving enhancer protein 3-1, chloroplastic oxygen-evolving enhancer protein 3-2, chloroplastic oxygen-evolving enhancer protein 3-1, chloroplastic-like oxygen-evolving enhancer protein 3-2, chloroplastic-like oxygen-evolving enhancer protein 3-1, chloroplastic-like oxygen-evolving enhancer protein 3, chloroplastic oxygen-evolving enhancer protein 3, chloroplastic oxygen-evolving enhancer protein 3, chloroplastic oxygen-evolving enhancer protein 3, chloroplastic uncharacterized LOC100499794 uncharacterized LOC100306034 oxygen-evolving enhancer protein 3, chloroplastic oxygen-evolving enhancer protein 3-2, chloroplastic oxygen-evolving enhancer protein 3, chloroplastic oxygen-evolving enhancer protein 3-2, chloroplastic photosystem II oxygen-evolving complex protein 3 oxygen-evolving enhancer protein 3-2, chloroplastic oxygen-evolving enhancer protein 3-2, chloroplastic oxygen-evolving enhancer protein 3-2, chloroplastic-like oxygen-evolving enhancer protein 3-2, chloroplastic-like oxygen-evolving enhancer protein 3, chloroplastic-like oxygen-evolving enhancer protein 3-1, chloroplast oxygen-evolving enhancer protein 3-1, chloroplastic-like oxygen-evolving enhancer protein 3, chloroplastic oxygen-evolving enhancer protein 3, chloroplastic oxygen-evolving enhancer protein 3, chloroplastic-like oxygen-evolving enhancer protein 3-1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 12
ath00196 Photosynthesis - antenna proteins 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 15
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 8
bra00196 Photosynthesis - antenna proteins 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 7
bra00196 Photosynthesis - antenna proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 8
ghi00630 Glyoxylate and dicarboxylate metabolism 7
ghi00710 Carbon fixation by Calvin cycle 7
ghi00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 5
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 12
ghi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 9
vvi00196 Photosynthesis - antenna proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 8
ppo00196 Photosynthesis - antenna proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 13
sly00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 14
sot00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00053 Ascorbate and aldarate metabolism 2
nta00071 Fatty acid degradation 2
nta00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 10
nta00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 9
nta00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 10
zma00196 Photosynthesis - antenna proteins 4
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 12
zma00196 Photosynthesis - antenna proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 11
hvu00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 11
sbi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 5
cre00196 Photosynthesis - antenna proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825866 827877 103858917 103839762 106440261 106349077 106406479 107924939 107905958 107901779 102620317 100499794 100306034 100240959 7495298 7490773 25499987 543931 102602034 107828191 107816469 107767928 4343515 542279 103647735 100049048 123052491 123425803 8081712 5726867
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