Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT4G05460   RNI-like superfamily protein 
 ath-u.5   AT4G05460   RNI-like superfamily protein 
 ath-r.7   AT4G05460   RNI-like superfamily protein 
 ath-e.2   AT4G05460   RNI-like superfamily protein 
 ath-m.4.bio   AT4G05460   RNI-like superfamily protein 
 ath-m.4.hor   AT4G05460   RNI-like superfamily protein 
 ath-m.4.lig   AT4G05460   RNI-like superfamily protein 
 ath-m.4.str   AT4G05460   RNI-like superfamily protein 
 ath-m.4.tis   AT4G05460   RNI-like superfamily protein 
 ath-u.5   AT4G03635   F-box/LRR protein 
 bra-r.6   103836436   putative F-box/LRR-repeat protein 23 
 bra-r.6   103843448   F-box protein SKIP19 
 bna-r.1   106368961   putative F-box protein At4g05475 
 ghi-r.1   107938509   F-box protein SKIP19 
 cit-r.1   102622722   F-box protein SKIP19-like 
 gma-u.5   100788317   F-box protein SKIP19 
 gma-u.5   100801218   F-box protein SKIP19 
 vvi-u.5   100265193   F-box protein SKIP19 
 mtr-u.5   11445869   putative F-box/LRR-repeat protein 23 
 mtr-u.5   11445624   F-box protein SKIP19 
 sot-r.1   102583242   putative F-box/LRR-repeat protein 23 
 sot-r.1   102597957   F-box protein SKIP19-like 
 nta-r.1   107785824   F-box protein SKIP19 
 nta-r.1   107782717   F-box protein SKIP19 
 nta-r.1   107770400   F-box protein SKIP19 
 osa-u.5   4344873   putative F-box/LRR-repeat protein 23 
 zma-u.5   109943001   putative F-box/LRR-repeat protein 23 
 zma-u.5   100273165   ubiquitin-protein ligase 
 zma-u.5   100284322   uncharacterized LOC100284322 
 tae-r.2   123187029   putative F-box/LRR-repeat protein 23 
 hvu-r.1   123426827   putative F-box/LRR-repeat protein 23 
 hvu-r.1   123395628   putative F-box/LRR-repeat protein 23 
 hvu-r.1   123409966   putative F-box/LRR-repeat protein 23 
 sbi-r.1   8068197   putative F-box/LRR-repeat protein 23 
 bdi-r.1   100822301   putative F-box/LRR-repeat protein 23 

close


Top 50 coexpressed genes to AT4G05460 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to AT4G05460 (ath-m.9 coexpression data)

CoexMap"825896"


athAT4G05460 | Entrez gene ID : 825896      
Species ath bra bna ghi cit gma vvi mtr sot nta osa zma tae hvu sbi bdi ppo cre sly
Paralog 10 2 1 1 1 2 1 2 2 3 1 3 1 3 1 1 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_567294.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_567294.1)
Subcellular
localization
TargetP
chlo 7,  other 6  (predict for NP_567294.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT4G05460
ath-u.5
for
AT4G05460
ath-r.7
for
AT4G05460
ath-e.2
for
AT4G05460
ath-m.4.bio
for
AT4G05460
ath-m.4.hor
for
AT4G05460
ath-m.4.lig
for
AT4G05460
ath-m.4.str
for
AT4G05460
ath-m.4.tis
for
AT4G05460
ath-u.5
for
AT4G03635
bra-r.6
for
103836436
bra-r.6
for
103843448
bna-r.1
for
106368961
ghi-r.1
for
107938509
cit-r.1
for
102622722
gma-u.5
for
100788317
gma-u.5
for
100801218
vvi-u.5
for
100265193
mtr-u.5
for
11445869
mtr-u.5
for
11445624
sot-r.1
for
102583242
sot-r.1
for
102597957
nta-r.1
for
107785824
nta-r.1
for
107782717
nta-r.1
for
107770400
osa-u.5
for
4344873
zma-u.5
for
109943001
zma-u.5
for
100273165
zma-u.5
for
100284322
tae-r.2
for
123187029
hvu-r.1
for
123426827
hvu-r.1
for
123395628
hvu-r.1
for
123409966
sbi-r.1
for
8068197
bdi-r.1
for
100822301


Ortholog ID: 306
Species ath bra bna ghi cit gma gma vvi mtr mtr sly sly sot nta nta nta osa zma zma zma tae hvu hvu hvu sbi bdi bdi
Symbol AT4G05460 LOC103836436 LOC106419987 LOC107938509 LOC102622722 LOC100788317 LOC100801218 LOC100265193 LOC11445869 LOC11445624 LOC101244792 LOC101254923 LOC102599722 LOC107770400 LOC107770397 LOC107792910 LOC4344873 LOC109943001 LOC100273165 LOC100284322 LOC123104519 LOC123426827 LOC123395628 LOC123409966 LOC8085020 LOC100822301 LOC100838930
Function* RNI-like superfamily protein putative F-box/LRR-repeat protein 23 F-box protein SKIP19-like F-box protein SKIP19 F-box protein SKIP19-like F-box protein SKIP19 F-box protein SKIP19 F-box protein SKIP19 putative F-box/LRR-repeat protein 23 F-box protein SKIP19 F-box family protein F-box protein SKIP19-like putative F-box/LRR-repeat protein 9 F-box protein SKIP19 putative F-box/LRR-repeat protein 9 putative F-box/LRR-repeat protein 9 putative F-box/LRR-repeat protein 23 putative F-box/LRR-repeat protein 23 ubiquitin-protein ligase uncharacterized LOC100284322 putative F-box/LRR-repeat protein 23 putative F-box/LRR-repeat protein 23 putative F-box/LRR-repeat protein 23 putative F-box/LRR-repeat protein 23 F-box protein SKIP19 putative F-box/LRR-repeat protein 23 putative F-box/LRR-repeat protein 23
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00220 Arginine biosynthesis 3
bra00250 Alanine, aspartate and glutamate metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00910 Nitrogen metabolism 3
bra01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 7
ghi03015 mRNA surveillance pathway 7
ghi03040 Spliceosome 7
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit00190 Oxidative phosphorylation 3
cit03420 Nucleotide excision repair 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 3
mtr00410 beta-Alanine metabolism 2
mtr00020 Citrate cycle (TCA cycle) 2
mtr01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04146 Peroxisome 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
sly03040 Spliceosome 3
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00910 Nitrogen metabolism 3
bdi01310 Nitrogen cycle 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825896 103836436 106419987 107938509 102622722 100788317 100801218 100265193 11445869 11445624 101244792 101254923 102599722 107770400 107770397 107792910 4344873 109943001 100273165 100284322 123104519 123426827 123395628 123409966 8085020 100822301 100838930
The preparation time of this page was 0.2 [sec].