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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PRL1   pleiotropic regulatory locus 1 
 ath-u.5   PRL1   pleiotropic regulatory locus 1 
 ath-r.7   PRL1   pleiotropic regulatory locus 1 
 ath-e.2   PRL1   pleiotropic regulatory locus 1 
 ath-m.4.bio   PRL1   pleiotropic regulatory locus 1 
 ath-m.4.hor   PRL1   pleiotropic regulatory locus 1 
 ath-m.4.lig   PRL1   pleiotropic regulatory locus 1 
 ath-m.4.str   PRL1   pleiotropic regulatory locus 1 
 ath-m.4.tis   PRL1   pleiotropic regulatory locus 1 
 ath-u.5   AT3G16650   Transducin/WD40 repeat-like superfamily protein 
 bra-r.6   103860812   protein pleiotropic regulatory locus 1 
 bna-r.1   106419472   protein pleiotropic regulatory locus 1 
 bna-r.1   106445839   protein pleiotropic regulatory locus 1 
 ghi-r.1   107933242   protein pleiotropic regulatory locus 1 
 ghi-r.1   107912450   protein pleiotropic regulatory locus 1 
 cit-r.1   102611423   protein pleiotropic regulatory locus 1 
 gma-u.5   100782357   protein pleiotropic regulatory locus 1 
 gma-u.5   100775526   protein pleiotropic regulatory locus 1 
 vvi-u.5   100248018   protein pleiotropic regulatory locus 1 
 ppo-u.5   7475907   protein pleiotropic regulatory locus 1 
 mtr-u.5   25488112   protein pleiotropic regulatory locus 1 
 sly-u.5   101250160   protein pleiotropic regulatory locus 1 
 sot-r.1   102589483   protein pleiotropic regulatory locus 1 
 nta-r.1   107798658   protein pleiotropic regulatory locus 1 
 nta-r.1   107810185   protein pleiotropic regulatory locus 1 
 osa-u.5   4332781   protein pleiotropic regulatory locus 1 
 zma-u.5   100282926   uncharacterized LOC100282926 
 tae-r.2   123078054   protein pleiotropic regulatory locus 1 
 tae-r.2   123069565   protein pleiotropic regulatory locus 1 
 tae-r.2   123060980   protein pleiotropic regulatory locus 1 
 hvu-r.1   123443403   protein pleiotropic regulatory locus 1 
 sbi-r.1   110436336   protein pleiotropic regulatory locus 1 
 bdi-r.1   100823370   protein pleiotropic regulatory locus 1 
 cre-r.1   CHLRE_10g446900v5   uncharacterized protein 

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Top 50 coexpressed genes to PRL1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PRL1 (ath-m.9 coexpression data)

CoexMap"827272"


athPRL1 | Entrez gene ID : 827272      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0010215 [list] [network] cellulose microfibril organization  (17 genes)  IMP  
GO:0010182 [list] [network] sugar mediated signaling pathway  (40 genes)  IMP  
GO:0048825 [list] [network] cotyledon development  (61 genes)  IMP  
GO:0009749 [list] [network] response to glucose  (71 genes)  IMP  
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (200 genes)  IMP  
GO:0050832 [list] [network] defense response to fungus  (282 genes)  IMP  
GO:0042742 [list] [network] defense response to bacterium  (363 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IMP  
GO:0009755 [list] [network] hormone-mediated signaling pathway  (447 genes)  IMP  
GO:0006396 [list] [network] RNA processing  (588 genes)  IGI  
GO:0048364 [list] [network] root development  (600 genes)  IMP  
GO:0010154 [list] [network] fruit development  (807 genes)  IMP  
GO CC
GO:0016607 [list] [network] nuclear speck  (52 genes)  IDA  
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  IPI  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_193325.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 2,  pero 2,  cyto_pero 2  (predict for NP_193325.1)
Subcellular
localization
TargetP
other 6,  chlo 5  (predict for NP_193325.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PRL1
ath-u.5
for
PRL1
ath-r.7
for
PRL1
ath-e.2
for
PRL1
ath-m.4.bio
for
PRL1
ath-m.4.hor
for
PRL1
ath-m.4.lig
for
PRL1
ath-m.4.str
for
PRL1
ath-m.4.tis
for
PRL1
ath-u.5
for
AT3G16650
bra-r.6
for
103860812
bna-r.1
for
106419472
bna-r.1
for
106445839
ghi-r.1
for
107933242
ghi-r.1
for
107912450
cit-r.1
for
102611423
gma-u.5
for
100782357
gma-u.5
for
100775526
vvi-u.5
for
100248018
ppo-u.5
for
7475907
mtr-u.5
for
25488112
sly-u.5
for
101250160
sot-r.1
for
102589483
nta-r.1
for
107798658
nta-r.1
for
107810185
osa-u.5
for
4332781
zma-u.5
for
100282926
tae-r.2
for
123078054
tae-r.2
for
123069565
tae-r.2
for
123060980
hvu-r.1
for
123443403
sbi-r.1
for
110436336
bdi-r.1
for
100823370
cre-r.1
for
CHLRE_10g446900v5


Ortholog ID: 8942
Species ath ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol PRL1 AT3G16650 LOC103860812 LOC106419472 LOC106445839 LOC107933242 LOC107912450 LOC102611423 LOC100782357 LOC100775526 LOC100248018 LOC7475907 LOC25488112 LOC101250160 LOC102589483 LOC107798658 LOC107810185 LOC4332781 LOC100282926 LOC123078054 LOC123069565 LOC123060980 LOC123443403 LOC110436336 LOC100823370 CHLRE_10g446900v5
Function* pleiotropic regulatory locus 1 Transducin/WD40 repeat-like superfamily protein protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 uncharacterized LOC100282926 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 protein pleiotropic regulatory locus 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath03082 ATP-dependent chromatin remodeling 3
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03010 Ribosome 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03022 Basal transcription factors 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo03010 Ribosome 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03040 Spliceosome 3
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly04141 Protein processing in endoplasmic reticulum 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03040 Spliceosome 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00071 Fatty acid degradation 2
nta00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta04712 Circadian rhythm - plant 4
nta01200 Carbon metabolism 4
nta03040 Spliceosome 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03015 mRNA surveillance pathway 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03013 Nucleocytoplasmic transport 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03008 Ribosome biogenesis in eukaryotes 4
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03008 Ribosome biogenesis in eukaryotes 4
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03022 Basal transcription factors 2
sbi03420 Nucleotide excision repair 2
sbi00340 Histidine metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 12
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827272 820917 103860812 106419472 106445839 107933242 107912450 102611423 100782357 100775526 100248018 7475907 25488112 101250160 102589483 107798658 107810185 4332781 100282926 123078054 123069565 123060980 123443403 110436336 100823370 5724026
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