ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	RH8	RNAhelicase-like 8
ath-u.5	RH8	RNAhelicase-like 8
ath-r.7	RH8	RNAhelicase-like 8
ath-e.2	RH8	RNAhelicase-like 8
ath-m.4.bio	RH8	RNAhelicase-like 8
ath-m.4.hor	RH8	RNAhelicase-like 8
ath-m.4.lig	RH8	RNAhelicase-like 8
ath-m.4.str	RH8	RNAhelicase-like 8
ath-m.4.tis	RH8	RNAhelicase-like 8
ath-u.5	AT2G45810	DEA(D/H)-box RNA helicase family protein
ath-u.5	AT3G61240	DEA(D/H)-box RNA helicase family protein
bra-r.6	103836901	DEAD-box ATP-dependent RNA helicase 8
bra-r.6	103841951	DEAD-box ATP-dependent RNA helicase 12
bra-r.6	103830288	DEAD-box ATP-dependent RNA helicase 12
bna-r.1	106452176	DEAD-box ATP-dependent RNA helicase 6
bna-r.1	106353262	DEAD-box ATP-dependent RNA helicase 12-like
bna-r.1	106365528	DEAD-box ATP-dependent RNA helicase 8
ghi-r.1	107911969	DEAD-box ATP-dependent RNA helicase 8
ghi-r.1	107922025	DEAD-box ATP-dependent RNA helicase 8
ghi-r.1	107930495	DEAD-box ATP-dependent RNA helicase 8
cit-r.1	102614788	DEAD-box ATP-dependent RNA helicase 8
cit-r.1	127901135	DEAD-box ATP-dependent RNA helicase 8
gma-u.5	100818905	DEAD-box ATP-dependent RNA helicase 8
gma-u.5	100801402	DEAD-box ATP-dependent RNA helicase 8
gma-u.5	100800861	DEAD-box ATP-dependent RNA helicase 8
vvi-u.5	100251721	DEAD-box ATP-dependent RNA helicase 8-like
vvi-u.5	100241111	DEAD-box ATP-dependent RNA helicase 8
ppo-u.5	7496951	DEAD-box ATP-dependent RNA helicase 8
ppo-u.5	7461759	DEAD-box ATP-dependent RNA helicase 8
mtr-u.5	11427502	DEAD-box ATP-dependent RNA helicase 8
mtr-u.5	11436932	DEAD-box ATP-dependent RNA helicase 8
sly-u.5	101258459	DEAD-box ATP-dependent RNA helicase 8
sly-u.5	101253227	DEAD-box ATP-dependent RNA helicase 8
sly-u.5	101251630	DEAD-box ATP-dependent RNA helicase 8-like
sot-r.1	102585321	DEAD-box ATP-dependent RNA helicase 8-like
sot-r.1	102605476	DEAD-box ATP-dependent RNA helicase 8-like
sot-r.1	102587039	DEAD-box ATP-dependent RNA helicase 8
nta-r.1	107762362	DEAD-box ATP-dependent RNA helicase 8
nta-r.1	107792090	DEAD-box ATP-dependent RNA helicase 8
nta-r.1	107797871	DEAD-box ATP-dependent RNA helicase 8-like
osa-u.5	4330120	DEAD-box ATP-dependent RNA helicase 8-like
osa-u.5	4336501	DEAD-box ATP-dependent RNA helicase 6-like
osa-u.5	4349053	DEAD-box ATP-dependent RNA helicase 12-like
zma-u.5	100282580	ATP-dependent RNA helicase dhh1
zma-u.5	100194030	uncharacterized LOC100194030
zma-u.5	100272835	putative DEAD-box ATP-dependent RNA helicase family protein
tae-r.2	123137603	DEAD-box ATP-dependent RNA helicase 8
tae-r.2	123046023	DEAD-box ATP-dependent RNA helicase 6
tae-r.2	123048125	DEAD-box ATP-dependent RNA helicase 12
hvu-r.1	123427339	DEAD-box ATP-dependent RNA helicase 6
hvu-r.1	123401333	DEAD-box ATP-dependent RNA helicase 8
hvu-r.1	123433531	DEAD-box ATP-dependent RNA helicase 12
sbi-r.1	8067078	DEAD-box ATP-dependent RNA helicase 12
sbi-r.1	8067077	DEAD-box ATP-dependent RNA helicase 12
bdi-r.1	100844693	DEAD-box ATP-dependent RNA helicase 12
bdi-r.1	100840583	DEAD-box ATP-dependent RNA helicase 6
cre-r.1	CHLRE_04g223850v5	uncharacterized protein

Top 50 coexpressed genes to RH8 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to RH8 (ath-m.9 coexpression data)

CoexMap"828042"

[Cytoscape]

Annotation

functional annotation

KEGG

ath03018 [list] [network] RNA degradation (114 genes)

GO BP

GO:0019060 [list] [network] intracellular transport of viral protein in host cell	(4 genes)	IPI
GO:0016032 [list] [network] viral process	(20 genes)	IMP

GO CC

GO:0005829 [list] [network] cytosol	(2593 genes)	HDA
GO:0005737 [list] [network] cytoplasm	(14000 genes)	ISM

GO MF

GO:0003729 [list] [network] mRNA binding	(1514 genes)	HDA IDA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_191975.2 [sequence] [blastp]
NP_849535.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 2, mito 2, nucl 1, mito_plas 1, cyto_plas 1	(predict for NP_191975.2)
chlo 4, cyto 2, mito 2, nucl 1, mito_plas 1, cyto_plas 1	(predict for NP_849535.1)

Subcellular
localization
TargetP

mito 7, other 4	(predict for NP_191975.2)
mito 7, other 4	(predict for NP_849535.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for RH8	ath-u.5 for RH8	ath-r.7 for RH8	ath-e.2 for RH8	ath-m.4.bio for RH8	ath-m.4.hor for RH8	ath-m.4.lig for RH8	ath-m.4.str for RH8	ath-m.4.tis for RH8	ath-u.5 for AT2G45810	ath-u.5 for AT3G61240	bra-r.6 for 103836901	bra-r.6 for 103841951	bra-r.6 for 103830288	bna-r.1 for 106452176	bna-r.1 for 106353262	bna-r.1 for 106365528	ghi-r.1 for 107911969	ghi-r.1 for 107922025	ghi-r.1 for 107930495	cit-r.1 for 102614788	cit-r.1 for 127901135	gma-u.5 for 100818905	gma-u.5 for 100801402	gma-u.5 for 100800861	vvi-u.5 for 100251721	vvi-u.5 for 100241111	ppo-u.5 for 7496951	ppo-u.5 for 7461759	mtr-u.5 for 11427502	mtr-u.5 for 11436932	sly-u.5 for 101258459	sly-u.5 for 101253227	sly-u.5 for 101251630	sot-r.1 for 102585321	sot-r.1 for 102605476	sot-r.1 for 102587039	nta-r.1 for 107762362	nta-r.1 for 107792090	nta-r.1 for 107797871	osa-u.5 for 4330120	osa-u.5 for 4336501	osa-u.5 for 4349053	zma-u.5 for 100282580	zma-u.5 for 100194030	zma-u.5 for 100272835	tae-r.2 for 123137603	tae-r.2 for 123046023	tae-r.2 for 123048125	hvu-r.1 for 123427339	hvu-r.1 for 123401333	hvu-r.1 for 123433531	sbi-r.1 for 8067078	sbi-r.1 for 8067077	bdi-r.1 for 100844693	bdi-r.1 for 100840583	cre-r.1 for CHLRE_04g223850v5

Ortholog

Ortholog ID: 1849

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RH8

Function^*

RNAhelicase-like 8

DEA(D/H)-box RNA helicase family protein

DEAD-box ATP-dependent RNA helicase 12

DEAD-box ATP-dependent RNA helicase 6

DEAD-box ATP-dependent RNA helicase 8

DEAD-box ATP-dependent RNA helicase 12

DEAD-box ATP-dependent RNA helicase 8

DEAD-box ATP-dependent RNA helicase 8-like

DEAD-box ATP-dependent RNA helicase 8

DEAD-box ATP-dependent RNA helicase 8-like

DEAD-box ATP-dependent RNA helicase 8

DEAD-box ATP-dependent RNA helicase 8-like

DEAD-box ATP-dependent RNA helicase 6-like

DEAD-box ATP-dependent RNA helicase 12-like

ATP-dependent RNA helicase dhh1

uncharacterized LOC100194030

putative DEAD-box ATP-dependent RNA helicase family protein

DEAD-box ATP-dependent RNA helicase 8

DEAD-box ATP-dependent RNA helicase 6

DEAD-box ATP-dependent RNA helicase 8

DEAD-box ATP-dependent RNA helicase 6

DEAD-box ATP-dependent RNA helicase 8

DEAD-box ATP-dependent RNA helicase 12

DEAD-box ATP-dependent RNA helicase 6

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	6
ath03013	Nucleocytoplasmic transport	3
ath03250	Viral life cycle - HIV-1	3
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	4
ath03015	mRNA surveillance pathway	3
ath04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	7
ath03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	3
bra03440	Homologous recombination	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2
bra00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	7
bna03015	mRNA surveillance pathway	3
bna04382	Cornified envelope formation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	9
bna04142	Lysosome	4
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	10
bna04142	Lysosome	2
bna03015	mRNA surveillance pathway	2
bna04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	8
ghi04144	Endocytosis	2
ghi04517	IgSF CAM signaling	2
ghi05100	Bacterial invasion of epithelial cells	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	8
ghi04144	Endocytosis	4
ghi04517	IgSF CAM signaling	4
ghi05100	Bacterial invasion of epithelial cells	4
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	8
ghi03015	mRNA surveillance pathway	2
ghi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	3
cit03015	mRNA surveillance pathway	2
cit04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	6
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	6
gma03050	Proteasome	3
gma03015	mRNA surveillance pathway	2
gma04382	Cornified envelope formation	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	4
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo03018	RNA degradation	3
ppo04142	Lysosome	2
ppo05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	5
ppo03015	mRNA surveillance pathway	3
ppo04144	Endocytosis	2
ppo03013	Nucleocytoplasmic transport	2
ppo00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3
mtr03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	3
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2
sly03015	mRNA surveillance pathway	2
sly00020	Citrate cycle (TCA cycle)	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot03013	Nucleocytoplasmic transport	2
sot03015	mRNA surveillance pathway	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	4
sot03013	Nucleocytoplasmic transport	3
sot03040	Spliceosome	3
sot04144	Endocytosis	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot03083	Polycomb repressive complex	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	5
nta03082	ATP-dependent chromatin remodeling	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta03060	Protein export	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2
osa04141	Protein processing in endoplasmic reticulum	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2
osa03015	mRNA surveillance pathway	2
osa04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	6
osa04712	Circadian rhythm - plant	3
osa03018	RNA degradation	3
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00730	Thiamine metabolism	2
zma01240	Biosynthesis of cofactors	2
zma00514	Other types of O-glycan biosynthesis	2
zma04142	Lysosome	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	5
zma03018	RNA degradation	3
zma04142	Lysosome	2
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	3
hvu00600	Sphingolipid metabolism	2
hvu04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu03018	RNA degradation	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	3
sbi03018	RNA degradation	2
sbi04120	Ubiquitin mediated proteolysis	2
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi03018	RNA degradation	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	3
bdi03018	RNA degradation	2
bdi04382	Cornified envelope formation	2
bdi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00520	Amino sugar and nucleotide sugar metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

828042

819189

825296

103841951

103830288

103866240

106365528

106411846

106416227

107911969

107957248

107952921

102614788

127901135

100801402

100800861

100788032

100251721

100241111

7496951

7461759

11427502

11436932

101258459

101253227

101251630

102585321

102605476

102587039

107762362

107792090

107797871

4330120

4336501

4349053

100282580

100194030

100272835

123137603

123189788

123127839

123427339

123401333

123433531

8067078

8067077

100844693

100840583

5717886

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	3	3	2	3	2	2	2	3	3	3	3	3	3	3	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to RH8 (ath-m.9 coexpression data)

Top 50 enrichment test to RH8 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**