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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SWN   SET domain-containing protein 
 ath-u.5   SWN   SET domain-containing protein 
 ath-r.7   SWN   SET domain-containing protein 
 ath-e.2   SWN   SET domain-containing protein 
 ath-m.4.bio   SWN   SET domain-containing protein 
 ath-m.4.hor   SWN   SET domain-containing protein 
 ath-m.4.lig   SWN   SET domain-containing protein 
 ath-m.4.str   SWN   SET domain-containing protein 
 ath-m.4.tis   SWN   SET domain-containing protein 
 ath-u.5   CLF   SET domain-containing protein 
 bra-r.6   103864466   histone-lysine N-methyltransferase CLF 
 bra-r.6   103843745   histone-lysine N-methyltransferase MEDEA-like 
 bna-r.1   106435598   histone-lysine N-methyltransferase EZA1 
 bna-r.1   106426666   histone-lysine N-methyltransferase EZA1-like 
 ghi-r.1   107913232   histone-lysine N-methyltransferase CLF 
 ghi-r.1   121222416   histone-lysine N-methyltransferase CLF 
 ghi-r.1   107945999   histone-lysine N-methyltransferase EZA1 
 cit-r.1   102618782   histone-lysine N-methyltransferase CLF 
 cit-r.1   102606927   histone-lysine N-methyltransferase EZA1 
 gma-u.5   100795451   histone-lysine N-methyltransferase EZA1 
 vvi-u.5   100249229   histone-lysine N-methyltransferase CLF 
 vvi-u.5   100255466   histone-lysine N-methyltransferase EZA1 
 ppo-u.5   7481403   histone-lysine N-methyltransferase EZA1 
 ppo-u.5   7462603   histone-lysine N-methyltransferase CLF 
 ppo-u.5   7455428   histone-lysine N-methyltransferase EZA1 
 mtr-u.5   11427647   histone-lysine N-methyltransferase EZA1 
 mtr-u.5   11415502   histone-lysine N-methyltransferase CLF-like 
 sly-u.5   EZ1   histone-lysine N-methyltransferase EZ1 
 sly-u.5   EZ3   hstone-lysine N-methyltransferase EZ3 
 sly-u.5   EZ2   histone-lysine N-methyltransferase EZ2 
 sot-r.1   102598283   histone-lysine N-methyltransferase EZA1 
 sot-r.1   102584332   histone-lysine N-methyltransferase CLF-like 
 sot-r.1   102592748   histone-lysine N-methyltransferase CLF-like 
 nta-r.1   107765790   histone-lysine N-methyltransferase CLF 
 nta-r.1   107797215   histone-lysine N-methyltransferase CLF-like 
 nta-r.1   107799590   histone-lysine N-methyltransferase CLF-like 
 osa-u.5   4340748   histone-lysine N-methyltransferase CLF-like 
 osa-u.5   4332612   histone-lysine N-methyltransferase EZ1-like 
 zma-u.5   541954   enhancer of zeste 1 
 zma-u.5   541955   enhancer of zeste 3 
 tae-r.2   123085669   histone-lysine N-methyltransferase EZ1 
 tae-r.2   123092326   histone-lysine N-methyltransferase EZ1 
 tae-r.2   123133854   histone-lysine N-methyltransferase EZ1 
 hvu-r.1   123411881   histone-lysine N-methyltransferase CLF 
 hvu-r.1   123410743   histone-lysine N-methyltransferase CLF-like 
 hvu-r.1   123448823   histone-lysine N-methyltransferase EZ1-like 
 sbi-r.1   8083989   histone-lysine N-methyltransferase EZ3 
 sbi-r.1   8070885   histone-lysine N-methyltransferase EZ1 
 bdi-r.1   100846057   histone-lysine N-methyltransferase EZ1 
 bdi-r.1   100832275   histone-lysine N-methyltransferase EZ3 
 cre-r.1   CHLRE_17g746247v5   uncharacterized protein 

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Top 50 coexpressed genes to SWN (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SWN (ath-m.9 coexpression data)

CoexMap"828165"


athSWN | Entrez gene ID : 828165      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 2 3 2 1 2 3 2 3 3 3 2 2 3 3 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00310 [list] [network] Lysine degradation (31 genes)
ath03083 [list] [network] Polycomb repressive complex (65 genes)
GO BP
GO:0141044 [list] [network] epigenetic programming in the endosperm  (8 genes)  IMP  
GO:0010048 [list] [network] vernalization response  (18 genes)  IMP  
GO:1990110 [list] [network] callus formation  (29 genes)  IGI  
GO:0009960 [list] [network] endosperm development  (35 genes)  IGI  
GO:1900055 [list] [network] regulation of leaf senescence  (62 genes)  IGI  
GO:0045814 [list] [network] negative regulation of gene expression, epigenetic  (117 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IGI  
GO CC
GO:0005677 [list] [network] chromatin silencing complex  (8 genes)  IDA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0010484 [list] [network] histone H3 acetyltransferase activity  (6 genes)  ISS  
GO:0003727 [list] [network] single-stranded RNA binding  (56 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001328435.1 [sequence] [blastp]
NP_001328436.1 [sequence] [blastp]
NP_001328437.1 [sequence] [blastp]
NP_567221.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for NP_001328435.1)
nucl 8,  cyto 1  (predict for NP_001328436.1)
nucl 8,  cyto 1  (predict for NP_001328437.1)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_567221.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001328435.1)
other 9  (predict for NP_001328436.1)
other 9  (predict for NP_001328437.1)
other 9  (predict for NP_567221.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SWN
ath-u.5
for
SWN
ath-r.7
for
SWN
ath-e.2
for
SWN
ath-m.4.bio
for
SWN
ath-m.4.hor
for
SWN
ath-m.4.lig
for
SWN
ath-m.4.str
for
SWN
ath-m.4.tis
for
SWN
ath-u.5
for
CLF
bra-r.6
for
103864466
bra-r.6
for
103843745
bna-r.1
for
106435598
bna-r.1
for
106426666
ghi-r.1
for
107913232
ghi-r.1
for
121222416
ghi-r.1
for
107945999
cit-r.1
for
102618782
cit-r.1
for
102606927
gma-u.5
for
100795451
vvi-u.5
for
100249229
vvi-u.5
for
100255466
ppo-u.5
for
7481403
ppo-u.5
for
7462603
ppo-u.5
for
7455428
mtr-u.5
for
11427647
mtr-u.5
for
11415502
sly-u.5
for
EZ1
sly-u.5
for
EZ3
sly-u.5
for
EZ2
sot-r.1
for
102598283
sot-r.1
for
102584332
sot-r.1
for
102592748
nta-r.1
for
107765790
nta-r.1
for
107797215
nta-r.1
for
107799590
osa-u.5
for
4340748
osa-u.5
for
4332612
zma-u.5
for
541954
zma-u.5
for
541955
tae-r.2
for
123085669
tae-r.2
for
123092326
tae-r.2
for
123133854
hvu-r.1
for
123411881
hvu-r.1
for
123410743
hvu-r.1
for
123448823
sbi-r.1
for
8083989
sbi-r.1
for
8070885
bdi-r.1
for
100846057
bdi-r.1
for
100832275
cre-r.1
for
CHLRE_17g746247v5


Ortholog ID: 1567
Species ath ath bra bra bna bna ghi ghi ghi cit cit gma vvi vvi ppo ppo ppo mtr sly sly sly sot sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu hvu sbi sbi bdi bdi cre
Symbol SWN CLF LOC103864466 LOC103836786 LOC106435598 LOC106391060 LOC107913232 LOC121222416 LOC107945999 LOC102618782 LOC102606927 LOC100808730 LOC100249229 LOC100255466 LOC7481403 LOC7455428 LOC7476390 LOC11427647 EZ1 EZ3 EZ2 LOC102598283 LOC102584332 LOC102592748 LOC107765790 LOC107799590 LOC107771672 LOC4340748 LOC4332612 LOC541954 LOC541955 LOC123097675 LOC123149880 LOC123160399 LOC123411881 LOC123410743 LOC123448823 LOC8083989 LOC8070885 LOC100846057 LOC100832275 CHLRE_17g746247v5
Function* SET domain-containing protein SET domain-containing protein histone-lysine N-methyltransferase CLF histone-lysine N-methyltransferase EZA1 histone-lysine N-methyltransferase EZA1 histone-lysine N-methyltransferase CLF histone-lysine N-methyltransferase CLF histone-lysine N-methyltransferase CLF histone-lysine N-methyltransferase EZA1 histone-lysine N-methyltransferase CLF histone-lysine N-methyltransferase EZA1 histone-lysine N-methyltransferase EZA1 histone-lysine N-methyltransferase CLF histone-lysine N-methyltransferase EZA1 histone-lysine N-methyltransferase EZA1 histone-lysine N-methyltransferase EZA1 histone-lysine N-methyltransferase CLF histone-lysine N-methyltransferase EZA1 histone-lysine N-methyltransferase EZ1 hstone-lysine N-methyltransferase EZ3 histone-lysine N-methyltransferase EZ2 histone-lysine N-methyltransferase EZA1 histone-lysine N-methyltransferase CLF-like histone-lysine N-methyltransferase CLF-like histone-lysine N-methyltransferase CLF histone-lysine N-methyltransferase CLF-like histone-lysine N-methyltransferase CLF histone-lysine N-methyltransferase CLF-like histone-lysine N-methyltransferase EZ1-like enhancer of zeste 1 enhancer of zeste 3 histone-lysine N-methyltransferase EZ1 histone-lysine N-methyltransferase EZ1 histone-lysine N-methyltransferase EZ1 histone-lysine N-methyltransferase CLF histone-lysine N-methyltransferase CLF-like histone-lysine N-methyltransferase EZ1-like histone-lysine N-methyltransferase EZ3 histone-lysine N-methyltransferase EZ1 histone-lysine N-methyltransferase EZ1 histone-lysine N-methyltransferase EZ3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00310 Lysine degradation 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00564 Glycerophospholipid metabolism 2
cit00565 Ether lipid metabolism 2
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 2
gma03083 Polycomb repressive complex 2
gma00220 Arginine biosynthesis 2
gma00250 Alanine, aspartate and glutamate metabolism 2
gma00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 2
sot04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
osa03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00310 Lysine degradation 2
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00310 Lysine degradation 3
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 6
tae00310 Lysine degradation 3
tae03083 Polycomb repressive complex 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01250 Biosynthesis of nucleotide sugars 3
sbi04814 Motor proteins 2
sbi00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03410 Base excision repair 3
cre03030 DNA replication 2
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828165 816870 103864466 103836786 106435598 106391060 107913232 121222416 107945999 102618782 102606927 100808730 100249229 100255466 7481403 7455428 7476390 11427647 100134891 101267964 100134892 102598283 102584332 102592748 107765790 107799590 107771672 4340748 4332612 541954 541955 123097675 123149880 123160399 123411881 123410743 123448823 8083989 8070885 100846057 100832275 5723829
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