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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   RS40   arginine/serine-rich splicing factor 35 
 ath-u.5   RS40   arginine/serine-rich splicing factor 35 
 ath-r.7   RS40   arginine/serine-rich splicing factor 35 
 ath-e.2   RS40   arginine/serine-rich splicing factor 35 
 ath-m.4.bio   RS40   arginine/serine-rich splicing factor 35 
 ath-m.4.hor   RS40   arginine/serine-rich splicing factor 35 
 ath-m.4.lig   RS40   arginine/serine-rich splicing factor 35 
 ath-m.4.str   RS40   arginine/serine-rich splicing factor 35 
 ath-m.4.tis   RS40   arginine/serine-rich splicing factor 35 
 ath-u.5   RS31a   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   RS31   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   RS41   RNA-binding (RRM/RBD/RNP motifs) family protein 
 bra-r.6   103834867   serine/arginine-rich splicing factor RS40 
 bra-r.6   103866451   serine/arginine-rich splicing factor RS31 
 bra-r.6   103863268   serine/arginine-rich splicing factor RS40 
 bna-r.1   111212091   serine/arginine-rich splicing factor RS41-like 
 bna-r.1   106442982   serine/arginine-rich splicing factor RS40 
 bna-r.1   106418442   serine/arginine-rich splicing factor RS40 
 ghi-r.1   121224407   serine/arginine-rich splicing factor RS40 
 ghi-r.1   107948157   serine/arginine-rich splicing factor RS31 
 ghi-r.1   107945907   serine/arginine-rich splicing factor RS31 
 cit-r.1   127898598   serine/arginine-rich splicing factor RS31-like 
 cit-r.1   102619264   serine/arginine-rich splicing factor RS40 
 cit-r.1   102609625   serine/arginine-rich splicing factor RS31 
 gma-u.5   100781534   serine/arginine-rich splicing factor RS40 
 gma-u.5   100815452   serine/arginine-rich splicing factor RS41 
 gma-u.5   100801043   serine/arginine-rich splicing factor RS31 
 vvi-u.5   100262670   serine/arginine-rich splicing factor RS41 
 vvi-u.5   100255597   serine/arginine-rich splicing factor RS41 
 vvi-u.5   100255266   serine/arginine-rich splicing factor RS31 
 ppo-u.5   7464900   serine/arginine-rich splicing factor RS41 
 ppo-u.5   7454468   serine/arginine-rich splicing factor RS40 
 ppo-u.5   7497271   serine/arginine-rich splicing factor RS31 
 mtr-u.5   25483279   uncharacterized LOC25483279 
 mtr-u.5   11422261   serine/arginine-rich splicing factor RS40 
 mtr-u.5   11445062   serine/arginine-rich splicing factor RS31 
 sly-u.5   101246991   serine/arginine-rich splicing factor RS31 
 sly-u.5   101263057   serine/arginine-rich splicing factor RS41 
 sly-u.5   101264097   serine/arginine-rich splicing factor RS31 
 sot-r.1   102593185   serine/arginine-rich splicing factor RS41-like 
 sot-r.1   102598910   serine/arginine-rich splicing factor RS31-like 
 sot-r.1   102587621   serine/arginine-rich splicing factor RS31 
 nta-r.1   107802667   serine/arginine-rich splicing factor RS41 
 nta-r.1   107761600   serine/arginine-rich splicing factor RS41 
 nta-r.1   107764669   serine/arginine-rich splicing factor RS31-like 
 osa-u.5   4334964   serine/arginine-rich splicing factor RS31 
 osa-u.5   4328133   serine/arginine-rich splicing factor RS41 
 zma-u.5   100193841   uncharacterized LOC100193841 
 zma-u.5   542174   arginine/serine-rich splicing factor 1 
 zma-u.5   100192821   uncharacterized LOC100192821 
 tae-r.2   123099280   serine/arginine-rich splicing factor RS31 
 tae-r.2   123106211   serine/arginine-rich splicing factor RS31 
 tae-r.2   123050970   serine/arginine-rich splicing factor RS31 
 hvu-r.1   123401142   serine/arginine-rich splicing factor RS41-like 
 hvu-r.1   123431480   serine/arginine-rich splicing factor RS31-like 
 hvu-r.1   123450013   serine/arginine-rich splicing factor RS31-like 
 sbi-r.1   8059482   serine/arginine-rich splicing factor RS31 
 sbi-r.1   8065977   serine/arginine-rich splicing factor RS31 
 sbi-r.1   8055045   serine/arginine-rich splicing factor RS41 
 bdi-r.1   100841146   serine/arginine-rich splicing factor RS41 
 bdi-r.1   100825680   serine/arginine-rich splicing factor RS31 
 bdi-r.1   100825761   serine/arginine-rich splicing factor RS31 
 cre-r.1   CHLRE_16g674250v5   uncharacterized protein 

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Top 50 coexpressed genes to RS40 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RS40 (ath-m.9 coexpression data)

CoexMap"828654"


athRS40 | Entrez gene ID : 828654      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 3 3 3 3 3 3 3 3 3 3 2 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0031053 [list] [network] primary miRNA processing  (9 genes)  IGI  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (112 genes)  ISS  
GO:0008380 [list] [network] RNA splicing  (195 genes)  NAS  
GO CC
GO:0010445 [list] [network] nuclear dicing body  (7 genes)  IDA  
GO:0005681 [list] [network] spliceosomal complex  (19 genes)  ISS  
GO:0016607 [list] [network] nuclear speck  (52 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001078447.1 [sequence] [blastp]
NP_001190837.1 [sequence] [blastp]
NP_001320063.1 [sequence] [blastp]
NP_001328585.1 [sequence] [blastp]
NP_001328586.1 [sequence] [blastp]
NP_001328587.1 [sequence] [blastp]
NP_194280.1 [sequence] [blastp]
NP_974616.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001078447.1)
nucl 10  (predict for NP_001190837.1)
nucl 10  (predict for NP_001320063.1)
nucl 10  (predict for NP_001328585.1)
nucl 10  (predict for NP_001328586.1)
nucl 10  (predict for NP_001328587.1)
nucl 10  (predict for NP_194280.1)
nucl 10  (predict for NP_974616.2)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_001078447.1)
other 9  (predict for NP_001190837.1)
scret 6  (predict for NP_001320063.1)
scret 6  (predict for NP_001328585.1)
scret 6  (predict for NP_001328586.1)
other 8,  chlo 3  (predict for NP_001328587.1)
other 9  (predict for NP_194280.1)
scret 6  (predict for NP_974616.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
RS40
ath-u.5
for
RS40
ath-r.7
for
RS40
ath-e.2
for
RS40
ath-m.4.bio
for
RS40
ath-m.4.hor
for
RS40
ath-m.4.lig
for
RS40
ath-m.4.str
for
RS40
ath-m.4.tis
for
RS40
ath-u.5
for
RS31a
ath-u.5
for
RS31
ath-u.5
for
RS41
bra-r.6
for
103834867
bra-r.6
for
103866451
bra-r.6
for
103863268
bna-r.1
for
111212091
bna-r.1
for
106442982
bna-r.1
for
106418442
ghi-r.1
for
121224407
ghi-r.1
for
107948157
ghi-r.1
for
107945907
cit-r.1
for
127898598
cit-r.1
for
102619264
cit-r.1
for
102609625
gma-u.5
for
100781534
gma-u.5
for
100815452
gma-u.5
for
100801043
vvi-u.5
for
100262670
vvi-u.5
for
100255597
vvi-u.5
for
100255266
ppo-u.5
for
7464900
ppo-u.5
for
7454468
ppo-u.5
for
7497271
mtr-u.5
for
25483279
mtr-u.5
for
11422261
mtr-u.5
for
11445062
sly-u.5
for
101246991
sly-u.5
for
101263057
sly-u.5
for
101264097
sot-r.1
for
102593185
sot-r.1
for
102598910
sot-r.1
for
102587621
nta-r.1
for
107802667
nta-r.1
for
107761600
nta-r.1
for
107764669
osa-u.5
for
4334964
osa-u.5
for
4328133
zma-u.5
for
100193841
zma-u.5
for
542174
zma-u.5
for
100192821
tae-r.2
for
123099280
tae-r.2
for
123106211
tae-r.2
for
123050970
hvu-r.1
for
123401142
hvu-r.1
for
123431480
hvu-r.1
for
123450013
sbi-r.1
for
8059482
sbi-r.1
for
8065977
sbi-r.1
for
8055045
bdi-r.1
for
100841146
bdi-r.1
for
100825680
bdi-r.1
for
100825761
cre-r.1
for
CHLRE_16g674250v5


Ortholog ID: 1146
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol RS31a RS31 RS41 LOC103866451 LOC103863268 LOC103857154 LOC111212091 LOC106418442 LOC106450491 LOC107948157 LOC107930501 LOC107916625 LOC127898598 LOC102619264 LOC102609625 LOC100801043 LOC100797778 LOC100797709 LOC100262670 LOC100255597 LOC100255266 LOC7454468 LOC7497271 LOC7482121 LOC25483279 LOC11422261 LOC25500953 LOC101246991 LOC101258786 LOC101266564 LOC102593185 LOC102587621 LOC102598769 LOC107802667 LOC107778870 LOC107779376 LOC4334964 LOC4328133 LOC100193841 LOC100192821 LOC100281308 LOC123099280 LOC123135841 LOC123094071 LOC123401142 LOC123431480 LOC123450013 LOC8059482 LOC8065977 LOC8055045 LOC100841146 LOC100825680 LOC100825761 CHLRE_16g674250v5
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS40 serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS41-like serine/arginine-rich splicing factor RS40 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31-like serine/arginine-rich splicing factor RS40 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS40 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS40 uncharacterized LOC25483279 serine/arginine-rich splicing factor RS40 serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS41-like serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31-like serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS31-like uncharacterized LOC107779376 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS41 uncharacterized LOC100193841 uncharacterized LOC100192821 uncharacterized LOC100281308 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS41-like serine/arginine-rich splicing factor RS31-like serine/arginine-rich splicing factor RS31-like serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 8
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 3
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 8
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi03040 Spliceosome 4
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 10
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 9
sly03015 mRNA surveillance pathway 5
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 5
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 3
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 5
zma03083 Polycomb repressive complex 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
tae00970 Aminoacyl-tRNA biosynthesis 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00460 Cyanoamino acid metabolism 2
hvu00500 Starch and sucrose metabolism 2
hvu00999 Biosynthesis of various plant secondary metabolites 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 8
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi03015 mRNA surveillance pathway 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre04141 Protein processing in endoplasmic reticulum 5
cre03060 Protein export 2
cre04145 Phagosome 2
cre03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819273 825359 835279 103866451 103863268 103857154 111212091 106418442 106450491 107948157 107930501 107916625 127898598 102619264 102609625 100801043 100797778 100797709 100262670 100255597 100255266 7454468 7497271 7482121 25483279 11422261 25500953 101246991 101258786 101266564 102593185 102587621 102598769 107802667 107778870 107779376 4334964 4328133 100193841 100192821 100281308 123099280 123135841 123094071 123401142 123431480 123450013 8059482 8065977 8055045 100841146 100825680 100825761 5721439
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