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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   CIL   CCT motif family protein 
 ath-u.5   CIL   CCT motif family protein 
 ath-r.7   CIL   CCT motif family protein 
 ath-e.2   CIL   CCT motif family protein 
 ath-m.4.bio   CIL   CCT motif family protein 
 ath-m.4.hor   CIL   CCT motif family protein 
 ath-m.4.lig   CIL   CCT motif family protein 
 ath-m.4.str   CIL   CCT motif family protein 
 ath-m.4.tis   CIL   CCT motif family protein 
 ath-u.5   CIA2   chloroplast import apparatus 2 
 bra-r.6   103863737   protein CHLOROPLAST IMPORT APPARATUS 2 
 bra-r.6   103861597   protein CHLOROPLAST IMPORT APPARATUS 2 
 bra-r.6   103845156   protein CHLOROPLAST IMPORT APPARATUS 2 
 bna-r.1   106409124   protein CHLOROPLAST IMPORT APPARATUS 2 
 bna-r.1   106371508   protein CHLOROPLAST IMPORT APPARATUS 2-like 
 ghi-r.1   107907514   protein CHLOROPLAST IMPORT APPARATUS 2 
 ghi-r.1   107907368   protein CHLOROPLAST IMPORT APPARATUS 2 
 cit-r.1   102606754   protein CHLOROPLAST IMPORT APPARATUS 2-like 
 gma-u.5   102670319   protein CHLOROPLAST IMPORT APPARATUS 2 
 gma-u.5   100810303   protein CHLOROPLAST IMPORT APPARATUS 2 
 gma-u.5   100784788   protein CHLOROPLAST IMPORT APPARATUS 2 
 vvi-u.5   100265819   protein CHLOROPLAST IMPORT APPARATUS 2 
 ppo-u.5   7484067   protein CHLOROPLAST IMPORT APPARATUS 2 
 ppo-u.5   7485501   protein CHLOROPLAST IMPORT APPARATUS 2 
 mtr-u.5   11443621   protein CHLOROPLAST IMPORT APPARATUS 2 
 mtr-u.5   11441754   protein CHLOROPLAST IMPORT APPARATUS 2 
 sly-u.5   101255506   protein CHLOROPLAST IMPORT APPARATUS 2 
 sot-r.1   102605364   protein CHLOROPLAST IMPORT APPARATUS 2-like 
 nta-r.1   107792380   protein CHLOROPLAST IMPORT APPARATUS 2 
 nta-r.1   107785719   protein CHLOROPLAST IMPORT APPARATUS 2 
 nta-r.1   107760140   protein CHLOROPLAST IMPORT APPARATUS 2 
 osa-u.5   4328296   protein CHLOROPLAST IMPORT APPARATUS 2 
 osa-u.5   4341958   protein CHLOROPLAST IMPORT APPARATUS 2 
 zma-u.5   103626617   protein CHLOROPLAST IMPORT APPARATUS 2 
 zma-u.5   100501277   uncharacterized LOC100501277 
 zma-u.5   100281423   uncharacterized LOC100281423 
 tae-r.2   123132249   protein CHLOROPLAST IMPORT APPARATUS 2 
 tae-r.2   123136294   protein CHLOROPLAST IMPORT APPARATUS 2 
 tae-r.2   123143796   protein CHLOROPLAST IMPORT APPARATUS 2 
 hvu-r.1   123404396   protein CHLOROPLAST IMPORT APPARATUS 2 
 hvu-r.1   123407768   protein CHLOROPLAST IMPORT APPARATUS 2-like 
 sbi-r.1   8065562   protein CHLOROPLAST IMPORT APPARATUS 2 
 sbi-r.1   8074627   protein CHLOROPLAST IMPORT APPARATUS 2 
 bdi-r.1   100822180   protein CHLOROPLAST IMPORT APPARATUS 2 
 bdi-r.1   100822550   protein CHLOROPLAST IMPORT APPARATUS 2 

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Top 50 coexpressed genes to CIL (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CIL (ath-m.9 coexpression data)

CoexMap"828705"


athCIL | Entrez gene ID : 828705      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 2 2 1 3 1 2 2 1 1 3 2 3 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001328403.1 [sequence] [blastp]
NP_567737.1 [sequence] [blastp]
NP_849445.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001328403.1)
nucl 10  (predict for NP_567737.1)
nucl 10  (predict for NP_849445.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001328403.1)
chlo 9  (predict for NP_567737.1)
chlo 9  (predict for NP_849445.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
CIL
ath-u.5
for
CIL
ath-r.7
for
CIL
ath-e.2
for
CIL
ath-m.4.bio
for
CIL
ath-m.4.hor
for
CIL
ath-m.4.lig
for
CIL
ath-m.4.str
for
CIL
ath-m.4.tis
for
CIL
ath-u.5
for
CIA2
bra-r.6
for
103863737
bra-r.6
for
103861597
bra-r.6
for
103845156
bna-r.1
for
106409124
bna-r.1
for
106371508
ghi-r.1
for
107907514
ghi-r.1
for
107907368
cit-r.1
for
102606754
gma-u.5
for
102670319
gma-u.5
for
100810303
gma-u.5
for
100784788
vvi-u.5
for
100265819
ppo-u.5
for
7484067
ppo-u.5
for
7485501
mtr-u.5
for
11443621
mtr-u.5
for
11441754
sly-u.5
for
101255506
sot-r.1
for
102605364
nta-r.1
for
107792380
nta-r.1
for
107785719
nta-r.1
for
107760140
osa-u.5
for
4328296
osa-u.5
for
4341958
zma-u.5
for
103626617
zma-u.5
for
100501277
zma-u.5
for
100281423
tae-r.2
for
123132249
tae-r.2
for
123136294
tae-r.2
for
123143796
hvu-r.1
for
123404396
hvu-r.1
for
123407768
sbi-r.1
for
8065562
sbi-r.1
for
8074627
bdi-r.1
for
100822180
bdi-r.1
for
100822550


Ortholog ID: 3606
Species ath ath bra bra bra bna bna ghi ghi cit gma gma gma vvi ppo ppo mtr mtr sly sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol CIL CIA2 LOC103863737 LOC103861597 LOC103845156 LOC106444633 LOC106377535 LOC107907514 LOC107907368 LOC102606754 LOC100810303 LOC100784788 LOC100783619 LOC100265819 LOC7484067 LOC7485501 LOC11443621 LOC11441754 LOC101255506 LOC102605364 LOC107785719 LOC107760140 LOC107760235 LOC4328296 LOC4341958 LOC103626617 LOC100501277 LOC100281423 LOC123132249 LOC123136294 LOC123143796 LOC123404396 LOC123407768 LOC8065562 LOC8074627 LOC100822180 LOC100822550
Function* CCT motif family protein chloroplast import apparatus 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2-like protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2-like protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2-like protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2-like protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 uncharacterized LOC100501277 uncharacterized LOC100281423 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2-like protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2 protein CHLOROPLAST IMPORT APPARATUS 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
gma04141 Protein processing in endoplasmic reticulum 2
gma04626 Plant-pathogen interaction 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta00195 Photosynthesis 2
nta00270 Cysteine and methionine metabolism 2
nta00543 Exopolysaccharide biosynthesis 2
nta00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 2
nta03018 RNA degradation 2
nta00195 Photosynthesis 2
nta00270 Cysteine and methionine metabolism 2
nta00543 Exopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 2
nta03018 RNA degradation 2
nta00195 Photosynthesis 2
nta00270 Cysteine and methionine metabolism 2
nta00543 Exopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
osa00195 Photosynthesis 2
osa00860 Porphyrin metabolism 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 4
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 12
sbi00195 Photosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828705 835824 103863737 103861597 103845156 106444633 106377535 107907514 107907368 102606754 100810303 100784788 100783619 100265819 7484067 7485501 11443621 11441754 101255506 102605364 107785719 107760140 107760235 4328296 4341958 103626617 100501277 100281423 123132249 123136294 123143796 123404396 123407768 8065562 8074627 100822180 100822550
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