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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT4G34090   cyclin delta-3 
 ath-u.5   AT4G34090   cyclin delta-3 
 ath-r.7   AT4G34090   cyclin delta-3 
 ath-e.2   AT4G34090   cyclin delta-3 
 ath-m.4.bio   AT4G34090   cyclin delta-3 
 ath-m.4.hor   AT4G34090   cyclin delta-3 
 ath-m.4.lig   AT4G34090   cyclin delta-3 
 ath-m.4.str   AT4G34090   cyclin delta-3 
 ath-m.4.tis   AT4G34090   cyclin delta-3 
 ath-u.5   AT2G23370   cyclin delta-3 
 bra-r.6   103862318   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 bra-r.6   103842416   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 bna-r.1   106441141   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like 
 bna-r.1   106436716   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 bna-r.1   106368647   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like 
 ghi-r.1   107894286   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 ghi-r.1   107898227   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 ghi-r.1   121212215   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 cit-r.1   102617893   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like 
 cit-r.1   102619583   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like 
 gma-u.5   100809304   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 gma-u.5   100800367   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 vvi-u.5   100268130   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 vvi-u.5   100250309   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 ppo-u.5   7490044   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 ppo-u.5   7483102   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 mtr-u.5   11427177   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 sly-u.5   101267465   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 sot-r.1   102583668   uncharacterized LOC102583668 
 nta-r.1   107815685   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 nta-r.1   107806111   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 osa-u.5   4331348   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 zma-u.5   100193975   uncharacterized LOC100193975 
 tae-r.2   123099207   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 tae-r.2   123094017   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 tae-r.2   123106170   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 hvu-r.1   123450047   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like 
 sbi-r.1   8078020   uncharacterized LOC8078020 
 bdi-r.1   100833623   uncharacterized LOC100833623 
 cre-r.1   CHLRE_13g563150v5   uncharacterized protein 

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Top 50 coexpressed genes to AT4G34090 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G34090 (ath-m.9 coexpression data)

CoexMap"829555"


athAT4G34090 | Entrez gene ID : 829555      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 3 2 2 2 2 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0033614 [list] [network] chloroplast proton-transporting ATP synthase complex assembly  (3 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190908.1 [sequence] [blastp]
NP_001320131.1 [sequence] [blastp]
NP_567951.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  chlo 2,  mito 1  (predict for NP_001190908.1)
chlo 5,  mito 4  (predict for NP_001320131.1)
chlo 5,  mito 2,  vacu 1,  E.R. 1,  golg 1  (predict for NP_567951.1)
Subcellular
localization
TargetP
chlo 3  (predict for NP_001190908.1)
chlo 5  (predict for NP_001320131.1)
chlo 5  (predict for NP_567951.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT4G34090
ath-u.5
for
AT4G34090
ath-r.7
for
AT4G34090
ath-e.2
for
AT4G34090
ath-m.4.bio
for
AT4G34090
ath-m.4.hor
for
AT4G34090
ath-m.4.lig
for
AT4G34090
ath-m.4.str
for
AT4G34090
ath-m.4.tis
for
AT4G34090
ath-u.5
for
AT2G23370
bra-r.6
for
103862318
bra-r.6
for
103842416
bna-r.1
for
106441141
bna-r.1
for
106436716
bna-r.1
for
106368647
ghi-r.1
for
107894286
ghi-r.1
for
107898227
ghi-r.1
for
121212215
cit-r.1
for
102617893
cit-r.1
for
102619583
gma-u.5
for
100809304
gma-u.5
for
100800367
vvi-u.5
for
100268130
vvi-u.5
for
100250309
ppo-u.5
for
7490044
ppo-u.5
for
7483102
mtr-u.5
for
11427177
sly-u.5
for
101267465
sot-r.1
for
102583668
nta-r.1
for
107815685
nta-r.1
for
107806111
osa-u.5
for
4331348
zma-u.5
for
100193975
tae-r.2
for
123099207
tae-r.2
for
123094017
tae-r.2
for
123106170
hvu-r.1
for
123450047
sbi-r.1
for
8078020
bdi-r.1
for
100833623
cre-r.1
for
CHLRE_13g563150v5


Ortholog ID: 6498
Species ath ath bra bra bna bna bna ghi ghi ghi cit cit gma gma vvi vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT4G34090 AT2G23370 LOC103862318 LOC103842416 LOC106441141 LOC106436716 LOC106368647 LOC107894286 LOC121212215 LOC107913228 LOC102617893 LOC102619583 LOC100809304 LOC100800367 LOC100268130 LOC100250309 LOC7490044 LOC7483102 LOC11427177 LOC101267465 LOC102583668 LOC107815685 LOC107806111 LOC4331348 LOC100193975 LOC123099207 LOC123094017 LOC123106170 LOC123450047 LOC8078020 LOC100833623 CHLRE_13g563150v5
Function* cyclin delta-3 cyclin delta-3 protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic uncharacterized LOC102583668 protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic uncharacterized LOC100193975 protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like uncharacterized LOC8078020 uncharacterized LOC100833623 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03015 mRNA surveillance pathway 3
ath03060 Protein export 2
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi03060 Protein export 2
ghi00230 Purine metabolism 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00860 Porphyrin metabolism 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 3
sly00710 Carbon fixation by Calvin cycle 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00010 Glycolysis / Gluconeogenesis 2
nta00020 Citrate cycle (TCA cycle) 2
nta00260 Glycine, serine and threonine metabolism 2
nta00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
zma00970 Aminoacyl-tRNA biosynthesis 3
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00280 Valine, leucine and isoleucine degradation 3
tae00650 Butanoate metabolism 3
tae00900 Terpenoid backbone biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 5
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae04146 Peroxisome 3
tae00710 Carbon fixation by Calvin cycle 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 5
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae01230 Biosynthesis of amino acids 4
tae00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 2
bdi00220 Arginine biosynthesis 2
bdi00330 Arginine and proline metabolism 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829555 816869 103862318 103842416 106441141 106436716 106368647 107894286 121212215 107913228 102617893 102619583 100809304 100800367 100268130 100250309 7490044 7483102 11427177 101267465 102583668 107815685 107806111 4331348 100193975 123099207 123094017 123106170 123450047 8078020 100833623 5718982
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