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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SHR   GRAS family transcription factor 
 ath-u.5   SHR   GRAS family transcription factor 
 ath-r.7   SHR   GRAS family transcription factor 
 ath-e.2   SHR   GRAS family transcription factor 
 ath-m.4.bio   SHR   GRAS family transcription factor 
 ath-m.4.hor   SHR   GRAS family transcription factor 
 ath-m.4.lig   SHR   GRAS family transcription factor 
 ath-m.4.str   SHR   GRAS family transcription factor 
 ath-m.4.tis   SHR   GRAS family transcription factor 
 bra-r.6   103858567   protein SHORT-ROOT 
 bra-r.6   103862567   protein SHORT-ROOT 
 bna-r.1   111204710   protein SHORT-ROOT-like 
 bna-r.1   106361401   protein SHORT-ROOT-like 
 bna-r.1   106386234   protein SHORT-ROOT 
 ghi-r.1   107922418   protein SHORT-ROOT 
 ghi-r.1   107896922   protein SHORT-ROOT 
 ghi-r.1   107899311   protein SHORT-ROOT 
 cit-r.1   102623584   protein SHORT-ROOT 
 cit-r.1   102610900   protein SHORT-ROOT-like 
 gma-u.5   100778524   protein SHORT-ROOT 
 gma-u.5   100814082   protein SHORT-ROOT 
 gma-u.5   100818806   protein SHORT-ROOT 
 vvi-u.5   100854487   protein SHORT-ROOT 
 vvi-u.5   100263197   protein SHORT-ROOT 
 ppo-u.5   7491733   protein SHORT-ROOT 
 ppo-u.5   18103745   protein SHORT-ROOT 
 ppo-u.5   18106876   protein SHORT-ROOT 
 mtr-u.5   11409306   protein SHORT-ROOT 
 mtr-u.5   25487907   protein SHORT-ROOT 
 mtr-u.5   11434453   protein SHORT-ROOT 
 sly-u.5   101262675   protein SHORT-ROOT 
 sly-u.5   101249840   protein SHORT-ROOT 
 sot-r.1   102593647   protein SHORT-ROOT 
 sot-r.1   102598869   protein SHORT-ROOT-like 
 nta-r.1   107793941   protein SHORT-ROOT 
 nta-r.1   107813854   protein SHORT-ROOT-like 
 nta-r.1   107808399   protein SHORT-ROOT-like 
 osa-u.5   9269685   protein SHORT-ROOT 2 
 osa-u.5   4343753   protein SHORT-ROOT 1-like 
 zma-u.5   103636850   protein SHORT-ROOT 2-like 
 zma-u.5   103647790   protein SHORT-ROOT 1 
 zma-u.5   100383480   uncharacterized LOC100383480 
 tae-r.2   123188153   protein SHORT-ROOT 1 
 tae-r.2   123044387   protein SHORT-ROOT 1 
 hvu-r.1   123425503   protein SHORT-ROOT 1 
 sbi-r.1   8066249   protein SHORT-ROOT 2 
 sbi-r.1   8058376   protein SHORT-ROOT 1 
 bdi-r.1   100830802   protein SHORT-ROOT 1 

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Top 50 coexpressed genes to SHR (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SHR (ath-m.9 coexpression data)

CoexMap"829919"


athSHR | Entrez gene ID : 829919      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 2 3 2 3 3 2 2 3 2 3 2 1 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009660 [list] [network] amyloplast organization  (5 genes)  IMP  
GO:0045930 [list] [network] negative regulation of mitotic cell cycle  (9 genes)  IMP  
GO:0008356 [list] [network] asymmetric cell division  (22 genes)  IMP  
GO:0009959 [list] [network] negative gravitropism  (25 genes)  IMP  
GO:0009956 [list] [network] radial pattern formation  (28 genes)  IMP  
GO:0032350 [list] [network] regulation of hormone metabolic process  (29 genes)  NAS  
GO:0060586 [list] [network] multicellular organismal-level iron ion homeostasis  (29 genes)  IMP  
GO:0009958 [list] [network] positive gravitropism  (41 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0043565 [list] [network] sequence-specific DNA binding  (875 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS TAS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_195480.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 3,  mito 1,  cyto_nucl 1,  nucl_plas 1  (predict for NP_195480.1)
Subcellular
localization
TargetP
other 5,  mito 3  (predict for NP_195480.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SHR
ath-u.5
for
SHR
ath-r.7
for
SHR
ath-e.2
for
SHR
ath-m.4.bio
for
SHR
ath-m.4.hor
for
SHR
ath-m.4.lig
for
SHR
ath-m.4.str
for
SHR
ath-m.4.tis
for
SHR
bra-r.6
for
103858567
bra-r.6
for
103862567
bna-r.1
for
111204710
bna-r.1
for
106361401
bna-r.1
for
106386234
ghi-r.1
for
107922418
ghi-r.1
for
107896922
ghi-r.1
for
107899311
cit-r.1
for
102623584
cit-r.1
for
102610900
gma-u.5
for
100778524
gma-u.5
for
100814082
gma-u.5
for
100818806
vvi-u.5
for
100854487
vvi-u.5
for
100263197
ppo-u.5
for
7491733
ppo-u.5
for
18103745
ppo-u.5
for
18106876
mtr-u.5
for
11409306
mtr-u.5
for
25487907
mtr-u.5
for
11434453
sly-u.5
for
101262675
sly-u.5
for
101249840
sot-r.1
for
102593647
sot-r.1
for
102598869
nta-r.1
for
107793941
nta-r.1
for
107813854
nta-r.1
for
107808399
osa-u.5
for
9269685
osa-u.5
for
4343753
zma-u.5
for
103636850
zma-u.5
for
103647790
zma-u.5
for
100383480
tae-r.2
for
123188153
tae-r.2
for
123044387
hvu-r.1
for
123425503
sbi-r.1
for
8066249
sbi-r.1
for
8058376
bdi-r.1
for
100830802


Ortholog ID: 3133
Species ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae hvu sbi sbi bdi
Symbol SHR LOC103858567 LOC103862567 LOC106361401 LOC106386234 LOC106411098 LOC107896922 LOC107914649 LOC107941660 LOC102623584 LOC102610900 LOC100778524 LOC100814082 LOC100818806 LOC100854487 LOC100263197 LOC7491733 LOC18103745 LOC18106876 LOC11409306 LOC25487907 LOC11434453 LOC101262675 LOC101249840 LOC102593647 LOC102598869 LOC107793941 LOC107801134 LOC107822144 LOC9269685 LOC4343753 LOC103636850 LOC103647790 LOC100383480 LOC123188153 LOC123044387 LOC123425503 LOC8066249 LOC8058376 LOC100830802
Function* GRAS family transcription factor protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT-like protein SHORT-ROOT 2 protein SHORT-ROOT 1-like protein SHORT-ROOT 2-like protein SHORT-ROOT 1 uncharacterized LOC100383480 protein SHORT-ROOT 1 protein SHORT-ROOT 1 protein SHORT-ROOT 1 protein SHORT-ROOT 2 protein SHORT-ROOT 1 protein SHORT-ROOT 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04145 Phagosome 2
cit04148 Efferocytosis 2
cit04517 IgSF CAM signaling 2
cit04518 Integrin signaling 2
cit04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00943 Isoflavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 2
gma04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00380 Tryptophan metabolism 2
nta04075 Plant hormone signal transduction 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00380 Tryptophan metabolism 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 3
nta04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04016 MAPK signaling pathway - plant 2
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829919 103858567 103862567 106361401 106386234 106411098 107896922 107914649 107941660 102623584 102610900 100778524 100814082 100818806 100854487 100263197 7491733 18103745 18106876 11409306 25487907 11434453 101262675 101249840 102593647 102598869 107793941 107801134 107822144 9269685 4343753 103636850 103647790 100383480 123188153 123044387 123425503 8066249 8058376 100830802
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