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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100818806   protein SHORT-ROOT 
 gma-r.7   100818806   protein SHORT-ROOT 
 gma-u.5   100797072   protein SHORT-ROOT 
 gma-u.5   100814082   protein SHORT-ROOT 
 gma-u.5   100820459   protein SHORT-ROOT 
 mtr-u.5   11434453   protein SHORT-ROOT 
 mtr-u.5   25487907   protein SHORT-ROOT 
 mtr-u.5   11409306   protein SHORT-ROOT 
 ppo-u.5   18103745   protein SHORT-ROOT 
 ppo-u.5   18106876   protein SHORT-ROOT 
 ppo-u.5   7491733   protein SHORT-ROOT 
 ath-u.5   SHR   GRAS family transcription factor 
 vvi-u.5   100263197   protein SHORT-ROOT 
 vvi-u.5   100854487   protein SHORT-ROOT 
 sly-u.5   101262675   protein SHORT-ROOT 
 sly-u.5   101249840   protein SHORT-ROOT 
 osa-u.5   4343753   protein SHORT-ROOT 1-like 
 osa-u.5   9269685   protein SHORT-ROOT 2 
 zma-u.5   103636850   protein SHORT-ROOT 2-like 
 zma-u.5   103647790   protein SHORT-ROOT 1 
 zma-u.5   100383480   uncharacterized LOC100383480 

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Top 50 coexpressed genes to 100818806 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100818806 (gma-u.5 coexpression data)

CoexMap"100818806"


gmaLOC100818806 | Entrez gene ID : 100818806      
Species gma mtr ppo ath vvi sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 5 3 3 1 2 2 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (3122 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (1503 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (2313 genes)  IEA  
Protein XP_003543573.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 3  (predict for XP_003543573.1)
Subcellular
localization
TargetP
chlo 7,  other 4  (predict for XP_003543573.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100818806
gma-r.7
for
100818806
gma-u.5
for
100797072
gma-u.5
for
100814082
gma-u.5
for
100820459
mtr-u.5
for
11434453
mtr-u.5
for
25487907
mtr-u.5
for
11409306
ppo-u.5
for
18103745
ppo-u.5
for
18106876
ppo-u.5
for
7491733
ath-u.5
for
SHR
vvi-u.5
for
100263197
vvi-u.5
for
100854487
sly-u.5
for
101262675
sly-u.5
for
101249840
osa-u.5
for
4343753
osa-u.5
for
9269685
zma-u.5
for
103636850
zma-u.5
for
103647790
zma-u.5
for
100383480


Ortholog ID: 3133
Species gma gma mtr mtr ppo ppo ath bra bra vvi vvi ghi ghi bna bna cit cit sly sly sot sot nta nta osa osa zma zma tae tae hvu sbi sbi bdi
Symbol LOC100814082 LOC100778524 LOC25487907 LOC11409306 LOC7491733 LOC18103745 SHR LOC103862567 LOC103858567 LOC100263197 LOC100854487 LOC107941660 LOC107896922 LOC106361401 LOC106386234 LOC102623584 LOC102610900 LOC101249840 LOC101262675 LOC102593647 LOC102598869 LOC107793941 LOC107801134 LOC9269685 LOC4343753 LOC103647790 LOC103636850 LOC123044387 LOC123188153 LOC123425503 LOC8058376 LOC8066249 LOC100830802
Function* protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT GRAS family transcription factor protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT 2 protein SHORT-ROOT 1-like protein SHORT-ROOT 1 protein SHORT-ROOT 2-like protein SHORT-ROOT 1 protein SHORT-ROOT 1 protein SHORT-ROOT 1 protein SHORT-ROOT 1 protein SHORT-ROOT 2 protein SHORT-ROOT 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00943 Isoflavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04145 Phagosome 2
cit04148 Efferocytosis 2
cit04517 IgSF CAM signaling 2
cit04518 Integrin signaling 2
cit04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00380 Tryptophan metabolism 2
nta04075 Plant hormone signal transduction 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00380 Tryptophan metabolism 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04016 MAPK signaling pathway - plant 2
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100814082 100778524 25487907 11409306 7491733 18103745 829919 103862567 103858567 100263197 100854487 107941660 107896922 106361401 106386234 102623584 102610900 101249840 101262675 102593647 102598869 107793941 107801134 9269685 4343753 103647790 103636850 123044387 123188153 123425503 8058376 8066249 100830802
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