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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100797072   protein SHORT-ROOT 
 gma-r.7   100797072   protein SHORT-ROOT 
 gma-u.5   100814082   protein SHORT-ROOT 
 gma-u.5   100818806   protein SHORT-ROOT 
 gma-u.5   100820459   protein SHORT-ROOT 
 mtr-u.5   11434453   protein SHORT-ROOT 
 mtr-u.5   25487907   protein SHORT-ROOT 
 mtr-u.5   11409306   protein SHORT-ROOT 
 ppo-u.5   18103745   protein SHORT-ROOT 
 ppo-u.5   18106876   protein SHORT-ROOT 
 ppo-u.5   7491733   protein SHORT-ROOT 
 ath-u.5   SHR   GRAS family transcription factor 
 vvi-u.5   100263197   protein SHORT-ROOT 
 vvi-u.5   100854487   protein SHORT-ROOT 
 sly-u.5   101262675   protein SHORT-ROOT 
 sly-u.5   101249840   protein SHORT-ROOT 
 osa-u.5   4343753   protein SHORT-ROOT 1-like 
 osa-u.5   9269685   protein SHORT-ROOT 2 
 zma-u.5   103636850   protein SHORT-ROOT 2-like 
 zma-u.5   103647790   protein SHORT-ROOT 1 
 zma-u.5   100383480   uncharacterized LOC100383480 

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Top 50 coexpressed genes to 100797072 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100797072 (gma-u.5 coexpression data)

CoexMap"100797072"


gmaLOC100797072 | Entrez gene ID : 100797072      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 3 3 1 2 2 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009956 [list] [network] radial pattern formation  (6 genes)  IEA  
GO:0008356 [list] [network] asymmetric cell division  (13 genes)  IEA  
GO:0048366 [list] [network] leaf development  (23 genes)  IEA  
GO:0045930 [list] [network] negative regulation of mitotic cell cycle  (55 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (3122 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (1503 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (2313 genes)  IEA  
Protein XP_003538789.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  cyto 2,  cyto_nucl 2  (predict for XP_003538789.1)
Subcellular
localization
TargetP
other 6  (predict for XP_003538789.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100797072

.
gma-r.7
for
100797072

.
gma-u.5
for
100814082

.
gma-u.5
for
100818806

.
gma-u.5
for
100820459

.
mtr-u.5
for
11434453

.
mtr-u.5
for
25487907

.
mtr-u.5
for
11409306

.
ppo-u.5
for
18103745

.
ppo-u.5
for
18106876

.
ppo-u.5
for
7491733

.
ath-u.5
for
SHR

.
vvi-u.5
for
100263197

.
vvi-u.5
for
100854487

.
sly-u.5
for
101262675

.
sly-u.5
for
101249840

.
osa-u.5
for
4343753

.
osa-u.5
for
9269685

.
zma-u.5
for
103636850

.
zma-u.5
for
103647790

.
zma-u.5
for
100383480

.


Ortholog ID: 3133
Species ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi nta nta
Symbol SHR LOC100814082 LOC100778524 LOC101249840 LOC101262675 LOC9269685 LOC4343753 LOC103647790 LOC103636850 LOC103862567 LOC103858567 LOC100263197 LOC100854487 LOC7491733 LOC18103745 LOC25487907 LOC11409306 LOC123044387 LOC123188153 LOC123425503 LOC107941660 LOC107896922 LOC106361401 LOC106386234 LOC8058376 LOC8066249 LOC102593647 LOC102598869 LOC102623584 LOC102610900 LOC100830802 LOC107793941 LOC107801134
Function* GRAS family transcription factor protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT 2 protein SHORT-ROOT 1-like protein SHORT-ROOT 1 protein SHORT-ROOT 2-like protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT 1 protein SHORT-ROOT 1 protein SHORT-ROOT 1 protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT protein SHORT-ROOT 1 protein SHORT-ROOT 2 protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT 1 protein SHORT-ROOT protein SHORT-ROOT-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00943 Isoflavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04145 Phagosome 2
cit04148 Efferocytosis 2
cit04517 IgSF CAM signaling 2
cit04518 Integrin signaling 2
cit04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04016 MAPK signaling pathway - plant 2
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00380 Tryptophan metabolism 2
nta04075 Plant hormone signal transduction 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00380 Tryptophan metabolism 2
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829919 100814082 100778524 101249840 101262675 9269685 4343753 103647790 103636850 103862567 103858567 100263197 100854487 7491733 18103745 25487907 11409306 123044387 123188153 123425503 107941660 107896922 106361401 106386234 8058376 8066249 102593647 102598869 102623584 102610900 100830802 107793941 107801134
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